CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig21025_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig21025_at Contig21025 - - 7e-2 At2g16340 unknown protein S.X. H.G.
0.57 74.9 HVSMEm0009E22r2_x_at HVSMEm0009E22r2 - - 5e+0 At5g13720 - S.X. H.G.
0.44 58.9 Contig16455_at Contig16455 - - 1e-1 At3g46880 unknown protein S.X. H.G.
0.33 42.6 Contig15852_at Contig15852 - - 1e-33 At1g29940 NRPA2 S.X. H.G.
0.26 30.4 Contig16664_at Contig16664 - - 3e-8 At1g73180 eukaryotic translation initiation factor-related S.X. H.G.
0.24 27.2 Contig1434_s_at Contig1434 - - 2e-1 At5g58580 ATL63 (ARABIDOPSIS TÓ S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
28.9 99.9 GSM431573 pathogen isolates: Polymyxa betae - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
25.3 99.8 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
24.3 99.8 GSM431547 pathogen isolates: Mock - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
22.4 99.8 GSM431550 pathogen isolates: Polymyxa graminis - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
18.0 99.7 GSM431548 pathogen isolates: Mock - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
17.7 99.7 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
15.2 99.5 GSM431570 pathogen isolates: Mock inoculated control - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
14.1 99.5 GSM238439 Embryo 72 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
13.8 99.5 GSM431572 pathogen isolates: Polymyxa betae - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
13.8 99.5 GSM431551 pathogen isolates: Polymyxa graminis - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 1e-11 69 EBro08_SQ007_P13_at EBro08_SQ007_P13 - - 4e+0 At2g22060 - C.G. S.X.
0.04 4e-2 38 Contig19834_at Contig19834 - - 2e-1 At5g17820 peroxidase 57 (PER57) (P57) (PRXR10) C.G. S.X.
0.02 1e-1 36 Contig10693_at Contig10693 - - 7e-1 At1g28640 GDSL-motif lipase, putative C.G. S.X.
0.01 2e+0 32 Contig1800_x_at Contig1800 - - 3e-17 At2g37040 pal1 (Phe ammonia lyase 1) C.G. S.X.
0.01 2e+0 32 Contig1800_s_at Contig1800 - - 3e-17 At2g37040 pal1 (Phe ammonia lyase 1) C.G. S.X.
0.01 2e+0 32 Contig1800_at Contig1800 - - 3e-17 At2g37040 pal1 (Phe ammonia lyase 1) C.G. S.X.
0.02 2e+0 32 Contig1358_at Contig1358 - - 3e-15 At1g79870 oxidoreductase family protein C.G. S.X.
0.03 2e+0 32 Contig25510_at Contig25510 - - 2e-2 At5g43410 ethylene-responsive factor, putative C.G. S.X.
0.03 2e+0 32 Contig14663_s_at Contig14663 - - 1e+0 At4g38940 kelch repeat-containing F-box family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 7e-2 38 Arabidopsis thaliana At2g16340 816130 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMFOPAV - - - C.G. S.X.
0.03 2e+0 34 Glycine max PsAffx.CL2338Contig1_at PsAffx.CL2338Contig1 - - 1e+0 At5g67000 DNA binding / transcription factor C.G. S.X.
0.38 9e-74 278 Oryza sativa Os01g0968200 NM_189425.1 - Root cap family protein 2e+0 At3g19430 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.03 4e-1 36 Populus trichocarpa PtpAffx.15202.1.S1_at CV264024 hypothetical protein - 6e-7 At5g35100 peptidyl-prolyl cis-trans isomerase C.G. S.X.
0.43 2e-73 276 Triticum aestivum Ta.8784.1.S1_at CD452671 - - 3e+0 At3g19430 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.03 5e+0 30 Vitis vinifera 1617901_s_at CA817757 hypothetical protein LOC100259229 - 6e-18 At1g32470 glycine cleavage system H protein, mitochondrial, putative C.G. S.X.
0.19 4e-20 97 Zea mays Zm.9635.1.A1_at BM334297 - - 2e+1 At5g55940 emb2731 (embryo defective 2731) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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