Gene omics information

Query gene ID	Contig21003_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.81	92.8	Contig21003_at	Contig21003	-	-	6e+0	At5g17280	unknown protein	S.X.	H.G.	Please select
0.85	94.5	Contig7221_s_at	Contig7221	-	-	6e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.81	92.8	Contig19492_at	Contig19492	-	-	5e-1	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	S.X.	H.G.	Please select
0.76	89.8	HY09M22u_s_at	HY09M22u	-	-	3e+0	At2g04378	beta-galactosidase	S.X.	H.G.	Please select
0.74	89.1	HS18F06u_s_at	HS18F06u	-	-	7e-14	At2g47610	60S ribosomal protein L7A (RPL7aA)	S.X.	H.G.	Please select
0.73	88.7	Contig14763_at	Contig14763	-	-	2e-1	At2g37510	RNA-binding protein, putative	S.X.	H.G.	Please select
0.69	85.5	Contig18703_at	Contig18703	-	-	1e+0	At5g48205	zinc ion binding	S.X.	H.G.	Please select
0.69	85.5	Contig10241_at	Contig10241	-	-	2e-9	At1g29120	unknown protein	S.X.	H.G.	Please select
0.67	84.7	HM01F24T_s_at	HM01F24T	-	-	4e-5	At2g33370	60S ribosomal protein L23 (RPL23B)	S.X.	H.G.	Please select
0.65	81.4	rbags18e07_s_at	rbags18e07	-	-	4e-1	At3g58170	BS14A (BET1P/SFT1P-LIKE PROTEIN 14A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
167.4	100.0	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
56.2	100.0	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
48.8	99.9	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
43.3	99.9	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
26.7	99.8	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
15.5	99.6	GSM282027	Malting_day1_Legacy_rep2	GSE11200	Expression data from malting barley seeds
13.4	99.4	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.6	98.2	GSM282021	Malting_day4_Legacy_rep 2	GSE11200	Expression data from malting barley seeds
5.6	97.7	GSM282020	Malting_day4_Legacy_rep 3	GSE11200	Expression data from malting barley seeds
2.4	91.4	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	8e-13	73	Contig9939_at	Contig9939	-	-	2e+0	At4g17670	senescence-associated protein-related	C.G.	S.X.	Please select
0.04	2e-7	56	Contig9941_at	Contig9941	-	-	2e-5	At4g17670	senescence-associated protein-related	C.G.	S.X.	Please select
0.05	7e-4	44	Contig4062_at	Contig4062	-	-	3e-2	At4g17670	senescence-associated protein-related	C.G.	S.X.	Please select
0.05	1e-2	40	Contig7450_at	Contig7450	-	-	7e+0	At3g21055	PSBTN (photosystem II subunit T)	C.G.	S.X.	Please select
0.04	4e-2	38	Contig7873_at	Contig7873	-	-	1e-1	At1g06850	AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52)	C.G.	S.X.	Please select
0.05	2e-1	36	Contig64_at	Contig64	-	-	2e-2	At4g39260	GR-RBP8	C.G.	S.X.	Please select
0.02	2e-1	36	Contig2209_at	Contig2209	-	-	1e-1	At4g33730	pathogenesis-related protein, putative	C.G.	S.X.	Please select
0.04	2e-1	36	Z48624_x_at	Z48624	-	-	5e-4	At4g39260	GR-RBP8	C.G.	S.X.	Please select
0.03	2e-1	36	Contig2214_s_at	Contig2214	-	-	8e-2	At4g33730	pathogenesis-related protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e+0	32	Arabidopsis thaliana	At5g17280	831593	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;FBMOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-1	38	Glycine max	Gma.15151.1.S1_at	BG238739	-	-	2e+0	At5g40770	ATPHB3 (PROHIBITIN 3)	C.G.	S.X.	Please select
0.11	9e-19	95	Oryza sativa	OsAffx.4835.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	8e+0	32	Populus trichocarpa	PtpAffx.223514.1.S1_at	pmrna41554	hypothetical protein	-	1e+0	At1g33810	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	1e-4	48	Triticum aestivum	Ta.1707.2.S1_at	CA659404	-	-	7e-8	At4g17670	senescence-associated protein-related	C.G.	S.X.	Please select
0.03	7e+0	30	Vitis vinifera	1620364_at	CB004253	-	-	1e+0	At2g18690	unknown protein	C.G.	S.X.	Please select
0.04	6e-4	44	Zea mays	Zm.10449.1.S1_at	BQ528465	hypothetical protein LOC100274604	-	5e-4	At4g17670	senescence-associated protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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