Gene omics information

Query gene ID	Contig20974_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	58.9	Contig20974_at	Contig20974	-	-	7e-6	At3g14650	CYP72A11	S.X.	H.G.	Please select
0.55	72.0	Contig14904_at	Contig14904	-	-	2e+0	At2g28330	unknown protein	S.X.	H.G.	Please select
0.46	61.0	Contig16886_at	Contig16886	-	-	5e+0	At5g60460	sec61beta family protein	S.X.	H.G.	Please select
0.39	50.5	Contig9392_at	Contig9392	-	-	5e+0	At5g62780	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.33	42.6	Contig21935_at	Contig21935	-	-	1e+0	At3g49700	ACS9 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9)	S.X.	H.G.	Please select
0.32	40.3	Contig9752_at	Contig9752	-	-	3e+0	At2g11651	unknown protein	S.X.	H.G.	Please select
0.29	35.5	Contig13215_at	Contig13215	-	-	3e-10	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
39.7	99.9	GSM372983	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
38.7	99.9	GSM373009	genotype: 11542 - pathogen isolates: K1 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
25.2	99.8	GSM372986	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
19.4	99.7	GSM372982	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
18.8	99.7	GSM372985	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
18.1	99.7	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
16.5	99.6	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
15.5	99.6	GSM373005	genotype: 11542 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
14.4	99.5	GSM373008	genotype: 11542 - pathogen isolates: K1 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
14.0	99.5	GSM373007	genotype: 11542 - pathogen isolates: K1 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	5e-27	121	HVSMEa0013F14r2_at	HVSMEa0013F14r2	-	-	8e-5	At3g14680	CYP72A14	C.G.	S.X.	Please select
0.22	4e-12	71	EBro08_SQ004_B22_at	EBro08_SQ004_B22	-	-	3e+0	At3g14640	CYP72A10	C.G.	S.X.	Please select
0.05	2e-11	69	Contig3642_at	Contig3642	-	-	3e-13	At3g61760	ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B)	C.G.	S.X.	Please select
0.14	4e-9	61	Contig25441_at	Contig25441	-	-	3e-14	At3g14630	CYP72A9	C.G.	S.X.	Please select
0.11	9e-7	54	Contig15063_at	Contig15063	-	-	2e+0	At4g13690	unknown protein	C.G.	S.X.	Please select
0.08	9e-7	54	HVSMEa0003M04r2_at	HVSMEa0003M04r2	-	-	1e+0	At3g14630	CYP72A9	C.G.	S.X.	Please select
0.11	9e-7	54	Contig15063_s_at	Contig15063	-	-	2e+0	At4g13690	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig3045_at	Contig3045	-	-	2e-1	At4g25760	AtGDU2 (Arabidopsis thaliana GLUTAMINE DUMPER 2)	C.G.	S.X.	Please select
0.01	8e-1	34	Contig3047_s_at	Contig3047	-	-	1e-2	At2g46960	CYP709B1	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	7e-6	52	Arabidopsis thaliana	At3g14650	820693	CYP72A11	putative cytochrome P450	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	6e-1	36	Glycine max	Gma.16927.1.S1_at	BU547320	-	-	5e-1	At3g14680	CYP72A14	C.G.	S.X.	Please select
0.34	6e-42	173	Oryza sativa	Os.41199.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-3	44	Populus trichocarpa	PtpAffx.209960.1.S1_s_at	pmrna19645	cytochrome P450 /// cytochrome P450	-	2e-4	At1g11610	CYP71A18	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.21	2e-28	127	Triticum aestivum	Ta.19609.1.S1_at	AJ615628	-	-	1e+1	At5g60200	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.04	9e-9	59	Vitis vinifera	1606554_at	CB978027	hypothetical protein LOC100247788	-	8e-3	At2g26710	BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1)	C.G.	S.X.	Please select
0.23	4e-24	111	Zea mays	Zm.14316.1.S1_at	AY104671.1	hypothetical protein LOC100274358 /// hypothetical protein LOC100277073	-	1e-2	At3g14630	CYP72A9	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage