Gene omics information

Query gene ID	Contig20971_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig20971_at	Contig20971	-	-	3e-9	At4g17430	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig17488_at	Contig17488	beclin 1 protein	-	1e-4	At3g61710	autophagy protein Apg6 family	S.X.	H.G.	Please select
0.40	53.1	Contig12186_at	Contig12186	-	-	5e-9	At5g17620	-	S.X.	H.G.	Please select
0.40	53.1	Contig4112_at	Contig4112	-	-	6e-1	At2g30560	glycine-rich protein	S.X.	H.G.	Please select
0.12	10.4	Contig13209_at	Contig13209	-	-	6e-1	At4g39070	zinc finger (B-box type) family protein	S.X.	H.G.	Please select
0.07	5.8	Contig7585_at	Contig7585	-	-	2e+0	At3g54490	RPB5E (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, E)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.9	99.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
17.4	99.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
12.5	99.4	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.3	99.1	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
10.1	99.1	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
9.8	99.1	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
8.4	98.8	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.5	98.6	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.2	98.5	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	36	Contig24244_at	Contig24244	-	-	3e-1	At1g69960	PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig4595_s_at	Contig4595	-	-	6e-8	At1g14260	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig4595_at	Contig4595	-	-	6e-8	At1g14260	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig14005_at	Contig14005	-	-	2e-16	At2g48070	RPH1 (RESISTANCE TO PHYTOPHTHORA 1)	C.G.	S.X.	Please select
0.01	5e+0	32	Contig8930_s_at	Contig8930	-	-	7e-1	At1g30040	ATGA2OX2 (GIBBERELLIN 2-OXIDASE)	C.G.	S.X.	Please select
0.01	5e+0	32	Contig17838_at	Contig17838	-	-	5e-1	At4g01895	systemic acquired resistance (SAR) regulator protein NIMIN-1-related	C.G.	S.X.	Please select
0.01	5e+0	32	Contig12084_at	Contig12084	-	-	6e-3	At4g21740	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	32	Contig10596_at	Contig10596	-	-	8e-10	At5g63870	PP7 (SERINE/THREONINE PHOSPHATASE 7)	C.G.	S.X.	Please select
0.01	5e+0	32	AF414175_at	AF414175	-	-	2e-1	Atmg00740	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-9	63	Arabidopsis thaliana	At4g17430	827454	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;PF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e+0	34	Glycine max	GmaAffx.48301.1.S1_at	AW277395	-	-	8e-6	At2g31141	unknown protein	C.G.	S.X.	Please select
0.56	0	749	Oryza sativa	Os10g0561200	AK066634.1	-	Conserved hypothetical protein	4e+0	At4g39260	GR-RBP8	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	6e-2	40	Populus trichocarpa	PtpAffx.219985.1.S1_at	pmrna36197	hypothetical protein	-	3e-3	At4g17430	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	3e+0	34	Triticum aestivum	TaAffx.52538.1.S1_at	CA705907	-	-	2e-1	At5g26720	unknown protein	C.G.	S.X.	Please select
0.02	5e-2	38	Vitis vinifera	1616078_at	CD711914	-	-	1e+0	At2g04910	glycosyl hydrolase family protein 17	C.G.	S.X.	Please select
0.29	1e-49	196	Zea mays	Zm.7831.1.A1_at	BM080062	hypothetical protein LOC100192532	-	1e+0	At3g25540	LAG1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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