Gene omics information

Query gene ID	Contig20962_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig20962_at	Contig20962	-	-	9e-9	At2g33820	MBAC1	S.X.	H.G.	Please select
0.60	77.3	Contig4307_at	Contig4307	-	-	3e+0	At2g27720	60S acidic ribosomal protein P2 (RPP2A)	S.X.	H.G.	Please select
0.60	77.3	Contig2263_s_at	Contig2263	-	-	2e-9	At3g56940	CRD1 (COPPER RESPONSE DEFECT 1)	S.X.	H.G.	Please select
0.60	77.3	Contig13636_at	Contig13636	-	-	9e-3	At2g25650	DNA-binding storekeeper protein-related	S.X.	H.G.	Please select
0.36	47.1	Contig26498_at	Contig26498	-	-	2e-2	At4g00960	protein kinase family protein	S.X.	H.G.	Please select
0.27	32.1	Contig19683_at	Contig19683	-	-	1e+0	At3g24820	BSD domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.2	98.0	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.0	97.2	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
4.1	96.2	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
4.1	96.2	GSM282027	Malting_day1_Legacy_rep2	GSE11200	Expression data from malting barley seeds
4.0	96.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-1	36	Contig17943_at	Contig17943	-	-	2e-1	At3g12650	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig10971_at	Contig10971	-	-	5e-11	At5g25880	ATNADP-ME3 (NADP-malic enzyme 3)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig3970_at	Contig3970	-	-	2e-3	At3g55460	SCL30	C.G.	S.X.	Please select
0.01	1e+0	34	Contig17971_at	Contig17971	-	-	2e+0	At5g15265	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig17504_at	Contig17504	-	-	4e-1	At1g52660	ATP binding	C.G.	S.X.	Please select
0.02	1e+0	34	Contig16469_at	Contig16469	-	-	2e+0	At2g37890	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select
0.02	4e+0	32	Contig16145_at	Contig16145	-	-	2e+0	At3g44140	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	Contig11041_at	Contig11041	-	-	1e+0	At3g08940	LHCB4.2 (light harvesting complex PSII)	C.G.	S.X.	Please select
0.01	2e+1	30	Contig5147_at	Contig5147	-	-	1e-1	At4g33210	F-box family protein (FBL15)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	9e-9	61	Arabidopsis thaliana	At2g33820	817949	MBAC1	encodes a mitochondrial ornithine transporter which exports ornithine from the mitochondrion to the cytosol	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e+0	34	Glycine max	Gma.4093.2.S1_at	BQ081460	-	-	6e-20	At2g34940	vacuolar sorting receptor, putative	C.G.	S.X.	Please select
0.39	9e-63	242	Oryza sativa	Os11g0423800	AK064691.1	-	Mitochondrial basic amino acid carrier	4e-9	At2g33820	MBAC1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.39117.1.S1_at	CK096432	hypothetical protein	-	1e-23	At2g43080	AT-P4H-1 (A. THALIANA P4H ISOFORM 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.68	0	924	Triticum aestivum	TaAffx.52844.2.A1_at	BJ284195	-	-	5e-9	At2g33820	MBAC1	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1619177_at	CD720160	hypothetical protein LOC100265301	-	5e+0	At4g26030	transcription factor	C.G.	S.X.	Please select
0.50	2e-109	395	Zea mays	Zm.16101.1.S1_at	CO527188	hypothetical protein LOC100191316	-	2e-13	At2g33820	MBAC1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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