Gene omics information

Query gene ID	Contig20916_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.69	85.5	Contig20916_at	Contig20916	-	-	3e-1	At5g66160	JR700	S.X.	H.G.	Please select
0.96	99.4	Contig3147_at	Contig3147	-	-	3e-4	At1g09940	HEMA2	S.X.	H.G.	Please select
0.89	95.4	Contig23108_at	Contig23108	-	-	8e-1	At3g16280	DNA binding / transcription factor	S.X.	H.G.	Please select
0.89	95.4	Contig3198_at	Contig3198	-	-	6e+0	At5g25940	early nodulin-related	S.X.	H.G.	Please select
0.86	94.8	Contig21607_at	Contig21607	-	-	2e+1	At5g50710	unknown protein	S.X.	H.G.	Please select
0.85	94.5	Contig18000_at	Contig18000	knotted 1	-	1e-33	At1g62360	STM (SHOOT MERISTEMLESS)	S.X.	H.G.	Please select
0.83	94.0	Contig26171_at	Contig26171	-	-	2e+0	At1g52580	ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)	S.X.	H.G.	Please select
0.83	94.0	Contig2160_at	Contig2160	-	-	2e-34	At4g38920	ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)	S.X.	H.G.	Please select
0.81	92.8	Contig10718_at	Contig10718	-	-	2e-7	At1g78440	ATGA2OX1 (gibberellin 2-oxidase 1)	S.X.	H.G.	Please select
0.80	92.5	Contig5460_s_at	Contig5460	-	-	8e-3	At1g04850	ubiquitin-associated (UBA)/TS-N domain-containing protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.7	99.7	GSM261054	Bonus Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
14.4	99.5	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
11.7	99.3	GSM372978	genotype: 11542 - pathogen isolates: 5874 - time: 8 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.2	99.1	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds
9.6	99.0	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
8.2	98.7	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
8.0	98.7	GSM261055	Bonus Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.1	98.4	GSM372964	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.9	98.3	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
6.7	98.3	GSM372963	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	36	Contig5198_s_at	Contig5198	-	-	5e+0	At4g02130	GATL6	C.G.	S.X.	Please select
0.03	2e-1	36	Contig361_s_at	Contig361	-	-	9e-8	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	C.G.	S.X.	Please select
0.03	2e-1	36	HVSMEh0080L10r2_x_at	HVSMEh0080L10r2	-	-	6e-11	At3g54890	LHCA1	C.G.	S.X.	Please select
0.02	2e-1	36	Contig5200_at	Contig5200	-	-	1e-5	At3g53110	LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4)	C.G.	S.X.	Please select
0.03	2e-1	36	Contig5198_at	Contig5198	-	-	5e+0	At4g02130	GATL6	C.G.	S.X.	Please select
0.03	2e-1	36	Contig1478_s_at	Contig1478	-	-	2e+0	At3g17300	-	C.G.	S.X.	Please select
0.01	2e-1	36	Contig460_s_at	Contig460	sucrose synthase	-	6e-12	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	C.G.	S.X.	Please select
0.02	6e-1	34	Contig11231_at	Contig11231	-	-	6e-1	At5g25530	DNAJ heat shock protein, putative	C.G.	S.X.	Please select
0.03	6e-1	34	Contig11641_at	Contig11641	-	-	5e+0	At5g28450	chlorophyll A-B binding protein, chloroplast, putative / LHCI type II CAB, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	36	Arabidopsis thaliana	At5g66160	836748	JR700	Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	HgAffx.20795.1.S1_at	BI748958	-	-	2e-1	At4g11430	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.04	6e-1	36	Oryza sativa	OsAffx.24736.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-1	38	Populus trichocarpa	PtpAffx.220590.1.S1_at	pmrna36995	-	-	7e-1	At3g04590	DNA-binding family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.29	2e-79	295	Triticum aestivum	TaAffx.64196.1.S1_at	BJ311284	-	-	7e-1	At3g58830	haloacid dehalogenase (HAD) superfamily protein	C.G.	S.X.	Please select
0.03	4e-4	44	Vitis vinifera	1611092_at	CF208653	-	-	3e-1	At3g51890	protein binding / structural molecule	C.G.	S.X.	Please select
0.05	9e-9	59	Zea mays	Zm.10055.1.A1_at	BM378738	hypothetical protein LOC100192882	-	2e+0	At2g01300	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage