Gene omics information

Query gene ID	Contig2088_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig2088_s_at	Contig2088	-	-	6e+0	At4g26260	MIOX4	S.X.	H.G.	Please select
0.15	14.1	Contig16971_at	Contig16971	-	-	3e-1	At4g30860	SDG4 (SET DOMAIN GROUP 4)	S.X.	H.G.	Please select
0.11	9.4	Contig19125_at	Contig19125	-	-	4e-3	At2g33980	atnudt22 (Arabidopsis thaliana Nudix hydrolase homolog 22)	S.X.	H.G.	Please select
0.05	4.1	Contig17846_at	Contig17846	-	-	3e-1	At4g27150	2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2	S.X.	H.G.	Please select
0.05	4.1	Contig18580_at	Contig18580	-	-	8e-16	At5g14390	-	S.X.	H.G.	Please select
0.01	1.1	Contig12469_at	Contig12469	-	-	5e+0	At5g21125	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.0	99.7	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
17.1	99.6	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
15.5	99.6	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
14.3	99.5	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
14.3	99.5	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
14.1	99.5	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
13.3	99.4	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
12.2	99.4	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds
11.5	99.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
11.2	99.2	GSM282020	Malting_day4_Legacy_rep 3	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.68	0	650	Contig2087_s_at	Contig2087	-	-	5e+0	At1g30500	NF-YA7 (NUCLEAR FACTOR Y, SUBUNIT A7)	C.G.	S.X.	Please select
0.16	3e-77	287	Contig2089_at	Contig2089	-	-	3e-18	At4g03120	proline-rich family protein	C.G.	S.X.	Please select
0.20	7e-7	54	Contig6119_at	Contig6119	-	-	4e-1	At4g30010	unknown protein	C.G.	S.X.	Please select
0.13	2e-4	46	Contig20696_at	Contig20696	-	-	4e+0	At2g42190	unknown protein	C.G.	S.X.	Please select
0.12	7e-4	44	Contig7855_s_at	Contig7855	-	-	1e-1	At3g13227	serine-rich protein-related	C.G.	S.X.	Please select
0.02	1e-2	40	Contig7096_at	Contig7096	-	-	7e-32	At1g22920	CSN5A (COP9 SIGNALOSOME 5A)	C.G.	S.X.	Please select
0.09	4e-2	38	Contig10717_at	Contig10717	-	-	1e+0	At5g26670	pectinacetylesterase, putative	C.G.	S.X.	Please select
0.02	7e-1	34	Contig17903_at	Contig17903	-	-	1e-3	At5g26230	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Contig6613_s_at	Contig6613	-	-	2e-18	At2g37680	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e+0	32	Arabidopsis thaliana	At4g26260	828732	MIOX4	Encodes a myo-inositol oxygenase.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	PsAffx.C76000013_at	PsAffx.C76000013	-	-	4e+0	At2g25080	ATGPX1 (GLUTATHIONE PEROXIDASE 1)	C.G.	S.X.	Please select
0.09	7e-4	46	Oryza sativa	Os01g0124200	AB098712.1	-	Bowman Birk trypsin inhibitor	2e+0	At4g00310	EDA8 (EMBRYO SAC DEVELOPMENT ARREST 8)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	PtpAffx.217893.1.S1_at	pmrna33341	hypothetical protein	-	4e+0	At1g16510	auxin-responsive family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.61	8e-64	244	Triticum aestivum	Ta.22925.1.S1_at	CA714166	-	-	1e+0	At1g58684	40S ribosomal protein S2, putative	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1614811_at	BQ792743	hypothetical protein LOC100258297	-	5e-15	At4g26610	D6PKL1 (D6 PROTEIN KINASE LIKE 1)	C.G.	S.X.	Please select
0.05	2e-4	46	Zea mays	Zm.14388.1.A1_at	CO529787	hypothetical protein LOC100274196	-	1e+1	At5g43401	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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