Gene omics information

Query gene ID	Contig20846_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	72.0	Contig20846_at	Contig20846	-	-	3e-6	At4g36860	zinc ion binding	S.X.	H.G.	Please select
0.75	89.5	Contig6632_s_at	Contig6632	-	-	2e-3	At5g37200	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.67	84.7	Contig11836_at	Contig11836	-	-	6e-10	At1g22650	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	S.X.	H.G.	Please select
0.67	84.7	Contig6633_at	Contig6633	-	-	4e+0	At4g17310	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig6634_at	Contig6634	-	-	9e-4	At3g09470	-	S.X.	H.G.	Please select
0.52	68.3	Contig2490_at	Contig2490	-	-	1e-6	At1g62660	beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar	S.X.	H.G.	Please select
0.50	66.9	Contig18444_at	Contig18444	-	-	2e+0	At1g08650	PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE)	S.X.	H.G.	Please select
0.40	53.1	Contig18440_at	Contig18440	-	-	2e+0	At3g56590	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
52.9	100.0	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
52.0	100.0	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
16.3	99.6	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
14.0	99.5	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.8	98.6	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.4	98.1	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.9	97.9	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.6	97.7	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.1	97.3	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.7	96.9	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	8e-8	57	Contig4156_s_at	Contig4156	-	-	2e-39	At1g10730	clathrin adaptor complexes medium subunit family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig9897_at	Contig9897	-	-	6e+0	At4g14690	ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2)	C.G.	S.X.	Please select
0.02	1e+0	34	HVSMEl0009P01r2_at	HVSMEl0009P01r2	-	-	1e+0	At3g26110	-	C.G.	S.X.	Please select
0.07	1e+0	34	Contig19075_at	Contig19075	-	-	2e-3	At3g50550	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	HVSMEn0019B10f_s_at	HVSMEn0019B10f	-	-	9e-1	At4g21450	vesicle-associated membrane family protein / VAMP family protein	C.G.	S.X.	Please select
0.01	5e+0	32	Contig7331_at	Contig7331	-	-	4e-2	At2g26230	uricase / urate oxidase / nodulin 35, putative	C.G.	S.X.	Please select
0.01	5e+0	32	Contig6720_at	Contig6720	-	-	6e-1	At5g08150	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	32	Contig3578_at	Contig3578	-	-	6e+0	At1g15757	-	C.G.	S.X.	Please select
0.02	5e+0	32	Contig17469_at	Contig17469	-	-	2e+0	At5g56795	MT1B	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	3e-6	54	Arabidopsis thaliana	At4g36860	829839	zinc ion binding	F:zinc ion binding;P:unknown;C:plasma membrane;MOPFB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	8e-35	149	Glycine max	Gma.2633.2.S1_at	BE329874	-	-	5e-45	At4g36860	zinc ion binding	C.G.	S.X.	Please select
0.49	0	977	Oryza sativa	Os06g0182500	AK069056.1	-	Ubiquitin interacting motif domain containingprotein	1e-6	At4g36860	zinc ion binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.27	7e-23	109	Populus trichocarpa	PtpAffx.221134.1.S1_at	pmrna37763	hypothetical protein	-	7e-25	At4g36860	zinc ion binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.13	3e-21	103	Triticum aestivum	TaAffx.128547.1.S1_at	BJ232676	-	-	1e-8	At1g19270	DA1 (DA 1)	C.G.	S.X.	Please select
0.09	8e-7	54	Vitis vinifera	1609571_at	BQ795107	hypothetical protein LOC100258119	-	6e-12	At4g36860	zinc ion binding	C.G.	S.X.	Please select
0.24	3e-41	169	Zea mays	Zm.13136.1.A1_at	CA404810	hypothetical protein LOC100191921	-	4e+0	At4g32900	aminoacyl-tRNA hydrolase	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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