Gene omics information

Query gene ID	Contig20782_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	74.9	Contig20782_at	Contig20782	-	-	4e-5	At4g23230	protein kinase family protein	S.X.	H.G.	Please select
0.44	58.9	HV_CEb0015D05r2_at	HV_CEb0015D05r2	-	-	1e+0	At5g47077	LCR6 (Low-molecular-weight cysteine-rich 6)	S.X.	H.G.	Please select
0.35	45.1	HI09E23r_at	HI09E23r	-	-	3e+0	At1g50470	-	S.X.	H.G.	Please select
0.32	40.3	HVSMEm0005J13r2_at	HVSMEm0005J13r2	-	-	3e-4	At3g03800	SYP131 (SYNTAXIN OF PLANTS 131)	S.X.	H.G.	Please select
0.29	35.5	Contig7975_at	Contig7975	-	-	1e-1	At4g35600	CONNEXIN 32	S.X.	H.G.	Please select
0.27	32.1	Contig17645_at	Contig17645	-	-	2e+0	At3g56810	unknown protein	S.X.	H.G.	Please select
0.25	28.9	HV08J24u_x_at	HV08J24u	-	-	1e+0	At2g35605	SWIB complex BAF60b domain-containing protein	S.X.	H.G.	Please select
0.25	28.9	Contig1138_at	Contig1138	-	-	2e-14	At1g07790	HTB1	S.X.	H.G.	Please select
0.24	27.2	Contig21217_at	Contig21217	-	-	2e+0	At5g64810	WRKY51	S.X.	H.G.	Please select
0.21	22.6	Contig18688_at	Contig18688	-	-	5e+0	At5g09260	VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
45.4	99.9	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
39.4	99.9	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
37.3	99.9	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
29.7	99.9	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
25.6	99.8	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
17.7	99.7	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
16.5	99.6	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
14.9	99.5	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.7	98.9	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.3	98.8	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	0	700	Contig14572_at	Contig14572	-	-	3e-5	At4g21410	protein kinase family protein	C.G.	S.X.	Please select
0.30	1e-28	127	HV_CEb0021G08r2_at	HV_CEb0021G08r2	-	-	2e-2	At4g04510	protein kinase family protein	C.G.	S.X.	Please select
0.14	5e-12	71	HV_CEb0017B21r2_at	HV_CEb0017B21r2	-	-	3e+0	Atmg00990	-	C.G.	S.X.	Please select
0.05	5e-6	52	Contig21140_at	Contig21140	-	-	1e-7	At4g27300	S-locus protein kinase, putative	C.G.	S.X.	Please select
0.05	5e-6	52	Contig20838_at	Contig20838	-	-	3e-4	At1g11330	S-locus lectin protein kinase family protein	C.G.	S.X.	Please select
0.10	2e-5	50	HVSMEm0018O23r2_at	HVSMEm0018O23r2	-	-	1e-3	At4g23150	protein kinase family protein	C.G.	S.X.	Please select
0.03	2e-5	50	Contig26498_at	Contig26498	-	-	2e-2	At4g00960	protein kinase family protein	C.G.	S.X.	Please select
0.11	2e-5	50	Contig25306_at	Contig25306	-	-	1e-3	At4g00970	protein kinase family protein	C.G.	S.X.	Please select
0.03	1e-3	44	Contig6958_s_at	Contig6958	-	-	8e-5	At4g23190	CRK11 (CYSTEINE-RICH RLK11)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-5	50	Arabidopsis thaliana	At4g23230	828422	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	3e-6	54	Glycine max	GmaAffx.81992.1.S1_at	BI471624	-	-	2e-11	At4g23180	CRK10 (CYSTEINE-RICH RLK10)	C.G.	S.X.	Please select
0.37	3e-124	446	Oryza sativa	Os10g0136500	AK120072.1	-	Protein kinase domain containing protein	2e-2	At1g11280	S-locus protein kinase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	9e-7	56	Populus trichocarpa	PtpAffx.225762.1.S1_s_at	pmrna45341	hypothetical protein	-	1e-8	At4g23230	protein kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.74	0	1150	Triticum aestivum	Ta.27455.1.S1_at	CA644954	-	-	3e-5	At4g23230	protein kinase family protein	C.G.	S.X.	Please select
0.07	4e-2	38	Vitis vinifera	1611358_at	CD006705	-	-	9e-8	At1g61370	S-locus lectin protein kinase family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zea mays	Zm.9768.1.A1_at	BM338514	hypothetical protein LOC100273687	-	3e-2	At1g29730	ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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