CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig20777_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.86 94.8 Contig20777_at Contig20777 - - 1e-1 At3g47640 basic helix-loop-helix (bHLH) family protein S.X. H.G.
0.73 88.7 baal1j07_at baal1j07 - - 5e-15 At4g30800 40S ribosomal protein S11 (RPS11B) S.X. H.G.
0.69 85.5 EBem04_SQ003_H15_at EBem04_SQ003_H15 - - 3e+0 At5g33806 unknown protein S.X. H.G.
0.67 84.7 HVSMEm0018O23r2_at HVSMEm0018O23r2 - - 1e-3 At4g23150 protein kinase family protein S.X. H.G.
0.67 84.7 HT06M11u_at HT06M11u - - 1e+1 Atcg01310 - S.X. H.G.
0.65 81.4 Contig23039_at Contig23039 - - 4e-2 At2g45920 U-box domain-containing protein S.X. H.G.
0.64 80.9 HY02C19u_at HY02C19u - - 5e+0 At4g15610 integral membrane family protein S.X. H.G.
0.61 78.7 Contig10097_at Contig10097 - - 4e-1 At3g16450 jacalin lectin family protein S.X. H.G.
0.58 74.9 HV_CEa0014H05r2_at HV_CEa0014H05r2 - - 3e+0 At5g64850 unknown protein S.X. H.G.
0.55 72.0 HY06F24u_x_at HY06F24u - - 1e+1 At5g05710 pleckstrin homology (PH) domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.6 97.7 GSM261036 Dicktoo-subzero-rep1 GSE10329 Low temperature stress in cv. Dicktoo
5.1 97.3 GSM261038 Dicktoo-subzero-rep3 GSE10329 Low temperature stress in cv. Dicktoo
4.3 96.4 GSM261058 Xantha b-12 Cotrol rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1 96.2 GSM398258 Martin_5d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.9 95.8 GSM398259 Martin_5d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.9 95.8 GSM419978 Awn_Rep1 GSE16754 Comparative transcriptional profiling of organs of the barley spike
3.9 95.8 GSM440969 Control awn_Rep1 GSE17669 Gene expression in the barley spike during drought stress
3.8 95.7 GSM261067 Xantha s-46 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.7 95.5 GSM398253 Martin_1d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.7 95.5 GSM261057 Xantha b-12 Cotrol rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 9e-29 127 Contig23267_at Contig23267 - - 5e+0 At3g03830 auxin-responsive protein, putative C.G. S.X.
0.07 2e-23 109 Contig12349_at Contig12349 - - 2e-3 At1g78895 - C.G. S.X.
0.04 5e-21 101 Contig6275_at Contig6275 - - 4e-10 At1g14650 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein C.G. S.X.
0.07 1e-18 93 Contig11182_at Contig11182 - - 7e-25 At5g36880 acetyl-CoA synthetase, putative / acetate-CoA ligase, putative C.G. S.X.
0.11 5e-12 71 rbaal22m20_s_at rbaal22m20 - - 2e+0 At1g37113 unknown protein C.G. S.X.
0.06 7e-8 57 Contig17478_at Contig17478 - - 2e+0 At2g17695 unknown protein C.G. S.X.
0.06 3e-7 56 Contig15934_at Contig15934 - - 1e+0 At1g05720 selenoprotein family protein C.G. S.X.
0.10 3e-7 56 EBro03_SQ003_E09_at EBro03_SQ003_E09 - - 3e+0 At2g32645 unknown protein C.G. S.X.
0.03 2e-5 50 Contig12091_at Contig12091 - - 8e-3 At4g04020 FIB (FIBRILLIN) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-1 38 Arabidopsis thaliana At3g47640 823918 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast;PMO - - - C.G. S.X.
0.02 8e-1 36 Glycine max GmaAffx.80798.1.S1_at BF325321 - - 1e+0 At1g63630 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.41 1e-83 311 Oryza sativa Os11g0601700 AK068017.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 8e-4 At4g30662 unknown protein C.G. S.X.
0.04 1e-2 42 Populus trichocarpa PtpAffx.22459.2.S1_a_at CV225581 hypothetical protein - 3e-2 At3g47640 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.11 2e-13 77 Triticum aestivum TaAffx.77976.1.S1_at CA739143 - - 8e+0 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative C.G. S.X.
0.04 3e-3 42 Vitis vinifera 1621617_at BQ796921 hypothetical protein LOC100259339 - 4e-2 At4g14410 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.02 9e-1 34 Zea mays Zm.18243.1.A1_at CN845008 - - 3e-4 At1g23170 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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