CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig20688_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.87 95.0 Contig20688_at Contig20688 - - 8e+0 At5g30500 galactinol synthase, putative S.X. H.G.
0.28 35.5 rbaak34i24_s_at rbaak34i24 - - 3e-1 At5g59870 HTA6 S.X. H.G.
0.25 28.9 Contig13779_at Contig13779 - - 3e+0 At4g38090 unknown protein S.X. H.G.
0.21 22.6 Contig15458_at Contig15458 - - 2e+0 At1g60660 CB5LP (CYTOCHROME B5-LIKE PROTEIN) S.X. H.G.
0.20 21.1 Contig9377_at Contig9377 - - 4e-27 At4g26300 emb1027 (embryo defective 1027) S.X. H.G.
0.17 16.9 Contig1386_s_at Contig1386 - - 3e+0 At4g23080 unknown protein S.X. H.G.
0.15 14.1 Contig25330_s_at Contig25330 - - 1e+0 At1g73280 scpl3 (serine carboxypeptidase-like 3) S.X. H.G.
0.13 11.6 Contig12392_at Contig12392 - - 2e-1 At1g54240 DNA binding S.X. H.G.
0.12 10.4 Contig6407_at Contig6407 - - 8e-6 At5g48220 indole-3-glycerol phosphate synthase, putative S.X. H.G.
0.11 9.4 HY03I24u_s_at HY03I24u - - 6e-2 At3g25470 bacterial hemolysin-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
59.7 100.0 GSM238427 Endosperm 72 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
51.7 100.0 GSM238422 Endosperm 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
44.0 99.9 GSM238423 Endosperm 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
34.3 99.9 GSM238424 Endosperm 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
32.4 99.9 GSM238425 Endosperm 48 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
27.3 99.8 GSM238420 Endosperm 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
12.7 99.4 GSM238421 Endosperm 0 h; Seed germination Rep 2 GSE9365 Expression data from barley maturing and germinating grains
12.4 99.4 GSM238426 Endosperm 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.9 98.3 GSM440978 Stressed seed_Rep1 GSE17669 Gene expression in the barley spike during drought stress
5.0 97.2 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 32 Contig11159_at Contig11159 - - 8e-1 At4g24980 - C.G. S.X.
0.03 1e+0 32 Contig15036_at Contig15036 - - 1e-1 At3g07090 unknown protein C.G. S.X.
0.03 4e+0 30 Contig3911_s_at Contig3911 - - 4e-56 At5g08290 YLS8 C.G. S.X.
0.04 2e+1 28 HVSMEb0009H14r2_x_at HVSMEb0009H14r2 - - 4e+0 At5g56120 unknown protein C.G. S.X.
0.03 2e+1 28 Contig19897_at Contig19897 - - 1e-1 At2g21910 CYP96A5 C.G. S.X.
0.03 2e+1 28 Contig18250_at Contig18250 - - 6e-1 At3g55460 SCL30 C.G. S.X.
0.01 2e+1 28 Contig8442_at Contig8442 - - 5e-24 At1g34470 permease-related C.G. S.X.
0.02 2e+1 28 Contig1813_s_at Contig1813 - - 1e-121 At5g55190 RAN3 (RAN GTPASE 3) C.G. S.X.
0.03 2e+1 28 Contig22182_at Contig22182 - - 4e-1 At1g55805 BolA-like family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e+0 30 Arabidopsis thaliana At5g30500 833137 galactinol synthase, putative F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO - - - C.G. S.X.
0.04 1e+1 30 Glycine max GmaAffx.81163.1.S1_at BE806688 - - 1e+1 At3g55252 - C.G. S.X.
0.06 2e+1 30 Oryza sativa OsAffx.20913.1.A1_at - - - 0 C.G. S.X.
0.05 7e-1 34 Populus trichocarpa Ptp.1040.1.A1_at CK090188 - - 1e-18 At5g10780 - C.G. S.X.
0.04 8e+0 30 Triticum aestivum TaAffx.56613.1.S1_at CA647782 - - 1e+0 At3g06110 MKP2 (MAPK PHOSPHATASE 2) C.G. S.X.
0.04 2e+0 30 Vitis vinifera 1607351_at CD802351 - - 3e+0 At4g17486 unknown protein C.G. S.X.
0.03 4e+0 30 Zea mays Zm.18489.1.A1_at CO525170 hypothetical protein LOC100193250 - 3e-2 At4g31410 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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