Gene omics information

Query gene ID	Contig20680_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig20680_at	Contig20680	-	-	5e+0	At3g44716	unknown protein	S.X.	H.G.	Please select
0.80	92.5	Contig14951_at	Contig14951	-	-	6e-1	At3g24535	unknown protein	S.X.	H.G.	Please select
0.78	91.2	Contig8295_at	Contig8295	-	-	2e+0	At1g63030	ddf2 (DWARF AND DELAYED FLOWERING 2)	S.X.	H.G.	Please select
0.76	89.8	HU09K13u_s_at	HU09K13u	-	-	8e+0	At5g57280	methyltransferase	S.X.	H.G.	Please select
0.75	89.5	Contig9463_at	Contig9463	-	-	3e-2	At5g23950	C2 domain-containing protein	S.X.	H.G.	Please select
0.74	89.1	Contig6279_at	Contig6279	-	-	5e-2	At3g24750	unknown protein	S.X.	H.G.	Please select
0.73	88.7	Contig6808_s_at	Contig6808	-	-	5e+0	At4g07526	unknown protein	S.X.	H.G.	Please select
0.70	86.0	Contig19713_at	Contig19713	-	-	4e+0	At5g05830	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.64	80.9	Contig5255_at	Contig5255	-	-	1e-15	At4g39660	AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2)	S.X.	H.G.	Please select
0.63	80.3	HVSMEk0005D04r2_s_at	HVSMEk0005D04r2	-	-	8e-42	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.8	99.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
15.7	99.6	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.3	99.4	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
11.1	99.2	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
10.2	99.1	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.9	98.7	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.9	98.7	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-2	38	Contig8464_at	Contig8464	-	-	3e+0	At5g07840	ankyrin repeat family protein	C.G.	S.X.	Please select
0.01	1e-1	36	Contig4267_at	Contig4267	-	-	2e-8	At4g00830	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	1e-1	36	Contig3362_at	Contig3362	-	-	3e-3	At5g08790	ATAF2	C.G.	S.X.	Please select
0.03	1e-1	36	Contig22900_at	Contig22900	very long chain fatty acid condensing enzyme CUT1;3-like	-	5e-3	At1g17330	metal-dependent phosphohydrolase HD domain-containing protein-related	C.G.	S.X.	Please select
0.02	1e-1	36	Contig18742_at	Contig18742	-	-	7e+0	At5g55690	MADS-box protein (AGL47)	C.G.	S.X.	Please select
0.02	1e-1	36	Contig12869_at	Contig12869	-	-	1e-1	At1g61255	-	C.G.	S.X.	Please select
0.02	1e-1	36	Contig12862_at	Contig12862	-	-	4e-2	At3g58570	DEAD box RNA helicase, putative	C.G.	S.X.	Please select
0.02	1e-1	36	Contig12788_at	Contig12788	-	-	1e-5	At1g32050	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please select
0.02	1e-1	36	Contig7451_at	Contig7451	-	-	1e-15	At3g51860	CAX3 (CATION EXCHANGER 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At3g44716	823600	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	Gma.14223.1.A1_at	BE824229	-	-	3e+0	At1g54050	17.4 kDa class III heat shock protein (HSP17.4-CIII)	C.G.	S.X.	Please select
0.18	6e-10	65	Oryza sativa	Os03g0140500	AK106342.1	-	Protein of unknown function DUF26 domaincontaining protein	3e-3	At5g37660	PDLP7 (PLASMODESMATA-LOCATED PROTEIN 7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-1	36	Populus trichocarpa	PtpAffx.111497.1.S1_at	CK087230	-	-	5e+0	At5g14740	CA2 (CARBONIC ANHYDRASE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	Ta.1785.1.A1_at	BE445122	-	-	2e-1	At2g40510	40S ribosomal protein S26 (RPS26A)	C.G.	S.X.	Please select
0.03	9e-2	36	Vitis vinifera	1615664_at	CA809363	hypothetical protein LOC100264293	-	4e+0	At3g10116	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zea mays	Zm.17115.1.S1_at	CN844978	-	-	1e+0	At5g67490	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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