Gene omics information

Query gene ID	Contig20667_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig20667_at	Contig20667	-	-	1e+0	At5g08480	VQ motif-containing protein	S.X.	H.G.	Please select
0.55	72.0	Contig13331_s_at	Contig13331	-	-	6e-16	At2g21860	violaxanthin de-epoxidase-related	S.X.	H.G.	Please select
0.53	69.7	Contig20270_at	Contig20270	-	-	2e+0	At4g28160	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.50	66.9	Contig12506_at	Contig12506	-	-	2e+0	At4g31740	-	S.X.	H.G.	Please select
0.35	45.1	Contig4367_s_at	Contig4367	-	-	3e+0	At3g04300	-	S.X.	H.G.	Please select
0.31	38.6	Contig25020_at	Contig25020	-	-	7e-3	At5g07450	CYCP4	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
78.2	100.0	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
40.4	99.9	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
40.4	99.9	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
24.4	99.8	GSM419978	Awn_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
24.4	99.8	GSM440969	Control awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
22.3	99.8	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
20.1	99.7	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
17.7	99.7	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
14.7	99.5	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
11.9	99.3	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	1126	Contig20667_s_at	Contig20667	-	-	1e+0	At5g08480	VQ motif-containing protein	C.G.	S.X.	Please select
0.04	4e-2	38	Contig2056_at	Contig2056	-	-	5e+0	At4g03156	small GTPase-related	C.G.	S.X.	Please select
0.04	4e-2	38	Contig2060_s_at	Contig2060	-	-	1e+0	At1g03950	VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3)	C.G.	S.X.	Please select
0.04	4e-2	38	HB27C21r_s_at	HB27C21r	-	-	1e+0	At5g03840	TFL1 (TERMINAL FLOWER 1)	C.G.	S.X.	Please select
0.03	4e-2	38	Contig2066_at	Contig2066	-	-	2e+0	At4g22650	-	C.G.	S.X.	Please select
0.04	4e-2	38	Contig2060_at	Contig2060	-	-	1e+0	At1g03950	VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3)	C.G.	S.X.	Please select
0.04	4e-2	38	Contig2057_at	Contig2057	-	-	1e+0	At4g35780	protein kinase family protein	C.G.	S.X.	Please select
0.04	4e-2	38	Contig2056_x_at	Contig2056	-	-	5e+0	At4g03156	small GTPase-related	C.G.	S.X.	Please select
0.02	1e-1	36	Contig4267_at	Contig4267	-	-	2e-8	At4g00830	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At5g08480	830747	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-1	36	Glycine max	HgAffx.17919.1.A1_at	CB278471	-	-	4e+0	At3g58450	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.09	1e-7	57	Oryza sativa	OsAffx.30149.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-1	36	Populus trichocarpa	PtpAffx.153438.1.A1_at	CV257114	hypothetical protein	-	1e+0	At4g31290	ChaC-like family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-2	40	Triticum aestivum	Ta.30948.3.S1_at	CA641408	-	-	4e+0	At3g05540	-	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1619479_a_at	CB980068	hypothetical protein LOC100242628 /// hypothetical protein LOC100261899	-	3e-14	At5g65280	GCL1 (GCR2-LIKE 1)	C.G.	S.X.	Please select
0.10	3e-2	38	Zea mays	Zm.19251.1.A1_at	CO520087	hypothetical protein LOC100191342	-	1e-1	At4g35550	WOX13 (WUSCHEL-RELATED HOMEOBOX 13)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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