Gene omics information

Query gene ID	Contig20549_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	78.7	Contig20549_at	Contig20549	-	-	2e-27	At2g39480	PGP6 (P-GLYCOPROTEIN 6)	S.X.	H.G.	Please select
0.67	84.7	Contig15303_at	Contig15303	-	-	6e-1	At3g10860	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	S.X.	H.G.	Please select
0.61	78.7	Contig10338_at	Contig10338	-	-	4e-2	At5g54900	ATRBP45A (RNA-binding protein 45A)	S.X.	H.G.	Please select
0.55	72.0	Contig11845_at	Contig11845	-	-	2e+0	At2g35850	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig8153_at	Contig8153	-	-	5e-42	At3g09550	protein binding	S.X.	H.G.	Please select
0.36	47.1	Contig11793_at	Contig11793	-	-	9e-9	At5g07910	leucine-rich repeat family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.8	99.7	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.5	98.8	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.5	98.6	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.3	98.5	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.2	98.5	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
6.0	97.9	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds
6.0	97.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.1	97.3	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-5	48	Contig16427_at	Contig16427	-	-	9e-2	At5g10120	ethylene insensitive 3 family protein	C.G.	S.X.	Please select
0.02	1e-2	40	AY013246_CDS-5_at	AY013246_CDS-5	-	-	3e-22	At5g39040	ATTAP2	C.G.	S.X.	Please select
0.06	1e-2	40	Contig17453_at	Contig17453	-	-	2e-3	At3g28345	ABC transporter family protein	C.G.	S.X.	Please select
0.01	5e-2	38	Contig7414_at	Contig7414	-	-	6e-15	At5g39040	ATTAP2	C.G.	S.X.	Please select
0.03	5e-2	38	Contig7413_s_at	Contig7413	-	-	4e-10	At5g39040	ATTAP2	C.G.	S.X.	Please select
0.04	2e-1	36	Contig7979_at	Contig7979	-	-	3e-2	At4g01820	PGP3 (P-GLYCOPROTEIN 3)	C.G.	S.X.	Please select
0.03	8e-1	34	EBro04_SQ004_O07a_at	EBro04_SQ004_O07a	-	-	4e+0	At5g10946	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	34	Contig16555_at	Contig16555	-	-	6e-3	At3g12685	-	C.G.	S.X.	Please select
0.02	8e-1	34	Contig15004_at	Contig15004	-	-	4e-8	At4g25450	ATNAP8	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	2e-27	123	Arabidopsis thaliana	At2g39480	818533	PGP6 (P-GLYCOPROTEIN 6)	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:nucleus, plasma membrane;BOMFAPV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	2e-1	38	Glycine max	GmaAffx.72800.2.S1_at	BM954341	-	-	7e-36	At3g55320	PGP20 (P-GLYCOPROTEIN 20)	C.G.	S.X.	Please select
0.20	3e-96	353	Oryza sativa	Os.25416.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	2e-16	87	Populus trichocarpa	PtpAffx.207683.1.S1_x_at	pmrna15253	multidrug/pheromone exporter, MDR family, ABC transporter family	-	3e-150	At3g55320	PGP20 (P-GLYCOPROTEIN 20)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.36	2e-64	246	Triticum aestivum	TaAffx.113111.1.S1_at	CA617925	-	-	2e-20	At3g55320	PGP20 (P-GLYCOPROTEIN 20)	C.G.	S.X.	Please select
0.02	1e-1	36	Vitis vinifera	1616496_at	CB975515	-	-	3e-5	At4g23710	VAG2	C.G.	S.X.	Please select
0.29	4e-58	224	Zea mays	Zm.17361.1.S1_at	CK370908	-	-	5e-19	At3g55320	PGP20 (P-GLYCOPROTEIN 20)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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