Gene omics information

Query gene ID	Contig2053_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	Contig2053_at	Contig2053	-	-	5e+0	At2g38880	NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)	S.X.	H.G.	Please select
0.67	84.7	Contig4486_at	Contig4486	-	-	4e-1	At5g16470	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.67	84.7	HF13G03r_at	HF13G03r	-	-	4e+0	At2g30020	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select
0.50	66.9	HVSMEi0017F16r2_x_at	HVSMEi0017F16r2	-	-	2e+0	At2g33620	DNA-binding family protein / AT-hook protein 1 (AHP1)	S.X.	H.G.	Please select
0.32	40.3	Contig1012_s_at	Contig1012	-	-	2e-43	At2g34420	LHB1B2	S.X.	H.G.	Please select
0.26	30.4	Contig4672_at	Contig4672	-	-	4e-71	At5g10840	endomembrane protein 70, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
59.9	100.0	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
55.1	100.0	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
54.2	100.0	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
54.2	100.0	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
40.4	99.9	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
21.0	99.7	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
21.0	99.7	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
14.7	99.5	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
14.6	99.5	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
14.6	99.5	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.77	1e-134	478	Contig2052_s_at	Contig2052	-	-	3e+0	At2g38880	NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)	C.G.	S.X.	Please select
0.04	1e-2	40	Contig12086_at	Contig12086	-	-	1e+0	At1g49640	hydrolase	C.G.	S.X.	Please select
0.04	1e-2	40	Contig6061_at	Contig6061	-	-	5e+0	At5g17280	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig1208_s_at	Contig1208	-	-	7e-22	At3g54890	LHCA1	C.G.	S.X.	Please select
0.01	6e-1	34	Contig9731_at	Contig9731	-	-	4e+0	At4g18000	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Contig17743_at	Contig17743	-	-	2e-1	At1g02710	glycine-rich protein	C.G.	S.X.	Please select
0.03	6e-1	34	Contig20877_at	Contig20877	-	-	5e-6	At1g04220	KCS2 (3-KETOACYL-COA SYNTHASE 2)	C.G.	S.X.	Please select
0.02	6e-1	34	Contig18311_at	Contig18311	very long chain fatty acid condensing enzyme CUT1;1-like	-	8e+0	At5g18748	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Contig17547_at	Contig17547	-	-	7e-7	At1g25450	KCS5 (3-KETOACYL-COA SYNTHASE 5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At2g38880	818472	NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)	Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1. Confers drought tolerance.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-3	42	Glycine max	HgAffx.13823.1.S1_at	CB379048	-	-	5e+0	At5g04830	unknown protein	C.G.	S.X.	Please select
0.03	6e-1	36	Oryza sativa	Os08g0241700	9636.m01432	-	-	2e-2	At2g01275	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e-1	36	Populus trichocarpa	PtpAffx.219558.1.S1_at	pmrna35510	hypothetical protein	-	4e+1	At5g10890	myosin heavy chain-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.62	1e-164	579	Triticum aestivum	Ta.10170.1.S1_at	BJ239084	-	-	9e-2	At1g66890	-	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1618408_at	CF210782	hypothetical protein LOC100264677	-	3e-1	At1g18400	BEE1 (BR Enhanced Expression 1)	C.G.	S.X.	Please select
0.03	9e-3	40	Zea mays	Zm.1782.1.A1_at	BQ538858	hypothetical protein LOC100273445	-	2e+0	At5g60970	TCP5 (TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 5)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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