Gene omics information

Query gene ID	Contig20492_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig20492_at	Contig20492	-	-	6e+0	At1g02720	GATL5 (GALACTURONOSYLTRANSFERASE 5)	S.X.	H.G.	Please select
0.42	55.2	Contig3042_at	Contig3042	-	-	2e-12	At5g25370	PLDALPHA3 (PHOSPHLIPASE D ALPHA 3)	S.X.	H.G.	Please select
0.38	49.5	Contig4724_at	Contig4724	-	-	7e-10	At3g25530	GLYR1 (GLYOXYLATE REDUCTASE 1)	S.X.	H.G.	Please select
0.35	45.1	Contig5733_at	Contig5733	-	-	2e+0	At5g47670	NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)	S.X.	H.G.	Please select
0.35	45.1	Contig361_s_at	Contig361	-	-	9e-8	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	S.X.	H.G.	Please select
0.35	45.1	Contig7506_at	Contig7506	-	-	2e-39	At3g23310	protein kinase, putative	S.X.	H.G.	Please select
0.35	45.1	Contig2856_s_at	Contig2856	-	-	4e+0	At4g21902	unknown protein	S.X.	H.G.	Please select
0.34	43.6	Contig9913_at	Contig9913	-	-	2e-18	At2g36130	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	S.X.	H.G.	Please select
0.34	43.6	Contig4260_at	Contig4260	-	-	5e-2	At4g37980	ELI3-1 (ELICITOR-ACTIVATED GENE 3-1)	S.X.	H.G.	Please select
0.32	40.3	Contig5698_at	Contig5698	-	-	3e-6	At4g32120	galactosyltransferase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
43.7	99.9	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
23.1	99.8	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
20.5	99.7	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
19.3	99.7	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
17.9	99.7	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
17.1	99.6	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
16.2	99.6	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
15.4	99.6	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
14.8	99.5	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
14.5	99.5	GSM431571	pathogen isolates: Polymyxa betae - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	8e-13	73	Contig12075_at	Contig12075	-	-	3e+0	At5g07010	ST2A (SULFOTRANSFERASE 2A)	C.G.	S.X.	Please select
0.03	7e-4	44	Contig18035_at	Contig18035	-	-	6e+0	At5g01075	beta-galactosidase	C.G.	S.X.	Please select
0.02	1e-2	40	Contig12910_at	Contig12910	-	-	1e-1	At1g18590	SOT17 (SULFOTRANSFERASE 17)	C.G.	S.X.	Please select
0.03	2e-1	36	HV08J23u_at	HV08J23u	-	-	4e+0	At5g45890	SAG12 (SENESCENCE-ASSOCIATED GENE 12)	C.G.	S.X.	Please select
0.03	2e-1	36	Contig12463_at	Contig12463	-	-	1e+0	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select
0.03	7e-1	34	HVSMEm0014K07r2_at	HVSMEm0014K07r2	-	-	1e+0	At5g50120	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.02	7e-1	34	Contig10221_at	Contig10221	-	-	6e-1	At4g33520	PAA1 (P-TYPE ATP-ASE 1)	C.G.	S.X.	Please select
0.02	7e-1	34	Contig10503_at	Contig10503	-	-	1e-2	At5g53180	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.01	7e-1	34	Contig6091_at	Contig6091	-	-	3e+0	At3g09590	pathogenesis-related protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e+0	32	Arabidopsis thaliana	At1g02720	839475	GATL5 (GALACTURONOSYLTRANSFERASE 5)	Encodes a protein with putative galacturonosyltransferase activity.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	Gma.4089.2.S1_at	BM528127	Hsp23.9	-	1e+0	At4g25200	ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6)	C.G.	S.X.	Please select
0.19	1e-20	101	Oryza sativa	Os06g0252800	AK070507.1	-	Estrogen sulfotransferase (EC 2.8.2.4)(Sulfotransferase, estrogen- preferring) (ST1E3)	6e-1	At2g27580	zinc finger (AN1-like) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.219018.1.S1_at	pmrna34808	hypothetical protein	-	2e+1	At5g48700	ubiquitin-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.62	5e-96	351	Triticum aestivum	TaAffx.74512.1.A1_at	BJ253532	-	-	2e+1	At5g36925	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1622735_s_at	CB340122	hypothetical protein LOC100256457	-	1e-6	At5g57550	XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3)	C.G.	S.X.	Please select
0.02	2e-1	36	Zea mays	Zm.445.1.S1_at	AF329371.1	Lipoxygenase	-	6e-3	At3g22400	LOX5	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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