Gene omics information

Query gene ID	Contig2046_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig2046_at	Contig2046	-	-	5e+0	At1g60815	RALFL7 (RALF-LIKE 7)	S.X.	H.G.	Please select
0.57	74.9	Contig5295_at	Contig5295	-	-	2e-113	At2g27210	kelch repeat-containing serine/threonine phosphoesterase family protein	S.X.	H.G.	Please select
0.40	53.1	Contig12262_at	Contig12262	-	-	2e-1	At5g23405	high mobility group (HMG1/2) family protein	S.X.	H.G.	Please select
0.40	53.1	Contig3848_at	Contig3848	-	-	7e-23	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	S.X.	H.G.	Please select
0.36	47.1	Contig2937_s_at	Contig2937	-	-	9e-27	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	S.X.	H.G.	Please select
0.36	47.1	Contig7725_at	Contig7725	-	-	8e-1	At1g22180	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
161.0	100.0	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
132.8	100.0	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
26.9	99.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.4	99.2	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.3	98.8	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
8.1	98.7	GSM130804	JA, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
6.7	98.3	GSM130803	JA, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
5.2	97.4	GSM146372	Golden Promise shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.3	96.4	GSM146378	Maythorpe shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM130805	JA and salinity stress, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.94	0	1045	Contig2044_at	Contig2044	-	-	2e+1	At5g01870	lipid transfer protein, putative	C.G.	S.X.	Please select
0.72	0	666	Contig2041_x_at	Contig2041	-	-	1e+0	At3g61310	DNA-binding family protein	C.G.	S.X.	Please select
0.72	0	666	Contig2041_at	Contig2041	-	-	1e+0	At3g61310	DNA-binding family protein	C.G.	S.X.	Please select
0.78	8e-170	595	Contig2043_s_at	Contig2043	-	-	1e+0	At2g35270	DNA-binding protein-related	C.G.	S.X.	Please select
0.47	2e-99	361	HVSMEn0020F17r2_x_at	HVSMEn0020F17r2	-	-	3e+0	At2g33370	60S ribosomal protein L23 (RPL23B)	C.G.	S.X.	Please select
0.09	2e-4	46	X68656_s_at	X68656	-	-	5e+0	At1g14120	2-oxoglutarate-dependent dioxygenase, putative	C.G.	S.X.	Please select
0.07	4e-2	38	Contig698_at	Contig698	-	-	8e+0	At3g11470	4'-phosphopantetheinyl transferase family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig9990_at	Contig9990	-	-	5e-20	At3g29090	pectinesterase family protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig4159_at	Contig4159	-	-	2e-60	At1g60780	HAP13 (HAPLESS 13)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e+0	32	Arabidopsis thaliana	At1g60815	5007822	RALFL7 (RALF-LIKE 7)	Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-2	40	Glycine max	HgAffx.12693.1.S1_at	CB375289	-	-	6e-2	At4g16140	proline-rich family protein	C.G.	S.X.	Please select
0.32	3e-24	113	Oryza sativa	Os11g0115100	AK119692.1	-	Lipid transfer protein	2e+0	At4g15460	glycine-rich protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.249.762.A1_at	CV261856	-	-	1e+0	At1g18760	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.70	7e-135	480	Triticum aestivum	TaAffx.130058.1.S1_x_at	AJ611761	-	-	3e-1	At3g60470	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1620523_at	CB349978	-	-	5e+0	At3g52110	unknown protein	C.G.	S.X.	Please select
0.10	6e-7	54	Zea mays	Zm.4168.1.A1_at	BM337240	hypothetical protein LOC100274469	-	7e+0	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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