Gene omics information

Query gene ID	Contig20455_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	80.3	Contig20455_at	Contig20455	-	-	2e+0	At5g48220	indole-3-glycerol phosphate synthase, putative	S.X.	H.G.	Please select
0.75	89.5	HY03E10u_s_at	HY03E10u	-	-	1e+1	At5g63060	transporter	S.X.	H.G.	Please select
0.73	88.7	Contig13274_at	Contig13274	-	-	9e-3	At1g71690	unknown protein	S.X.	H.G.	Please select
0.71	87.1	Contig1139_s_at	Contig1139	-	-	1e-19	At3g07110	60S ribosomal protein L13A (RPL13aA)	S.X.	H.G.	Please select
0.59	75.8	Contig1434_s_at	Contig1434	-	-	2e-1	At5g58580	ATL63 (ARABIDOPSIS TÓ	S.X.	H.G.	Please select
0.57	74.9	Contig7911_at	Contig7911	-	-	2e-4	At4g28400	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select
0.50	66.9	Contig18744_at	Contig18744	-	-	2e+0	At5g41630	F-box family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.3	99.3	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.4	98.5	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.3	98.5	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.1	98.4	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.0	98.4	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.3	98.1	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
6.2	98.0	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.0	97.9	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.5	97.6	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.5	97.6	GSM261063	Xantha s-46 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	9e-1	34	Contig9372_at	Contig9372	-	-	1e-2	At5g42480	ARC6 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6)	C.G.	S.X.	Please select
0.01	9e-1	34	Contig6800_at	Contig6800	-	-	2e-1	At1g65270	unknown protein	C.G.	S.X.	Please select
0.01	9e-1	34	Contig20310_at	Contig20310	-	-	3e+0	At5g56370	F-box family protein	C.G.	S.X.	Please select
0.01	9e-1	34	Contig7487_at	Contig7487	-	-	4e-37	At3g22750	protein kinase, putative	C.G.	S.X.	Please select
0.01	9e-1	34	Contig6800_s_at	Contig6800	-	-	2e-1	At1g65270	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	32	Contig5344_at	Contig5344	-	-	2e-8	At5g01220	SQD2 (sulfoquinovosyldiacylglycerol 2)	C.G.	S.X.	Please select
0.03	4e+0	32	HV_CEb0009L11r2_at	HV_CEb0009L11r2	-	-	2e+0	At2g07110	-	C.G.	S.X.	Please select
0.02	4e+0	32	Contig20145_at	Contig20145	-	-	7e+0	At5g02580	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	Contig14463_at	Contig14463	-	-	7e-1	At5g26740	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At5g48220	834875	indole-3-glycerol phosphate synthase, putative	F:indole-3-glycerol-phosphate synthase activity, catalytic activity;P:metabolic process, tryptophan metabolic process;C:chloroplast, chloroplast stroma;BOAFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	GmaAffx.90559.1.S1_x_at	CF806284	-	-	2e-23	At3g48890	ATMP2	C.G.	S.X.	Please select
0.07	1e-6	56	Oryza sativa	Os12g0438300	AK067669.1	-	Disease resistance protein family protein	3e+0	At3g60090	VQ motif-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-2	40	Populus trichocarpa	PtpAffx.62380.1.S1_s_at	BP936324	hypothetical protein	-	1e+0	At1g48940	plastocyanin-like domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	5e-1	36	Triticum aestivum	TaAffx.25943.1.S1_at	CA693964	-	-	4e+0	At2g03600	ATUPS3 (Arabidopsis thaliana ureide permease 3)	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1621874_x_at	CF204991.1	-	-	2e-23	At5g52240	MSBP1 (membrane steroid binding protein 1)	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	Zm.2319.2.A1_at	CD444652	-	-	5e+0	At5g65350	histone H3	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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