Gene omics information

Query gene ID	Contig20428_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	58.9	Contig20428_at	Contig20428	-	-	5e-4	At5g02070	protein kinase-related	S.X.	H.G.	Please select
0.56	74.3	Contig23558_at	Contig23558	-	-	7e-1	At3g15270	SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5)	S.X.	H.G.	Please select
0.53	69.7	Contig413_s_at	Contig413	-	-	0	At1g56070	LOS1	S.X.	H.G.	Please select
0.46	61.0	Contig11838_at	Contig11838	-	-	4e-2	At3g63320	protein phosphatase 2C-related / PP2C-related	S.X.	H.G.	Please select
0.40	53.1	Contig6147_at	Contig6147	-	-	3e-13	At3g20630	UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14)	S.X.	H.G.	Please select
0.22	24.2	Contig16045_at	Contig16045	-	-	2e+0	At3g07500	far-red impaired responsive family protein / FAR1 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.2	99.9	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
31.0	99.9	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
20.0	99.7	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
17.6	99.6	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
17.2	99.6	GSM372985	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
16.5	99.6	GSM372988	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
16.1	99.6	GSM372983	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
15.6	99.6	GSM372982	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.2	99.4	GSM372986	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.2	99.2	GSM373009	genotype: 11542 - pathogen isolates: K1 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	5e-18	91	Contig14065_at	Contig14065	-	-	6e-8	At5g49770	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.03	2e-11	69	Contig13446_at	Contig13446	-	-	1e-2	At5g02070	protein kinase-related	C.G.	S.X.	Please select
0.09	2e-11	69	Contig12629_s_at	Contig12629	-	-	6e-4	At1g16110	WAKL6 (wall associated kinase-like 6)	C.G.	S.X.	Please select
0.09	2e-11	69	Contig12629_at	Contig12629	-	-	6e-4	At1g16110	WAKL6 (wall associated kinase-like 6)	C.G.	S.X.	Please select
0.05	1e-9	63	Contig17605_at	Contig17605	-	-	2e+0	At5g60090	protein kinase family protein	C.G.	S.X.	Please select
0.03	4e-9	61	Contig9237_at	Contig9237	-	-	6e-8	At1g07570	APK1A	C.G.	S.X.	Please select
0.06	2e-8	59	Contig16121_at	Contig16121	-	-	1e-1	At5g35580	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	C.G.	S.X.	Please select
0.05	2e-8	59	Contig15156_at	Contig15156	-	-	2e+0	At1g48210	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.04	7e-8	57	Contig10767_at	Contig10767	-	-	3e-15	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-4	46	Arabidopsis thaliana	At5g02070	831776	protein kinase-related	F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	7e-4	46	Glycine max	GmaAffx.31879.1.A1_at	BU547825	-	-	1e-3	At5g41680	protein kinase family protein	C.G.	S.X.	Please select
0.27	6e-107	389	Oryza sativa	Os04g0439600	AK109788.1	-	Protein kinase domain containing protein	4e-4	At3g13065	SRF4 (STRUBBELIG-RECEPTOR FAMILY 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	2e-4	48	Populus trichocarpa	PtpAffx.212352.1.S1_at	pmrna24210	hypothetical protein	-	3e-4	At5g47850	CCR4 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	1e-7	57	Triticum aestivum	TaAffx.26787.1.S1_at	CA684955	-	-	4e-3	At1g48210	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.04	6e-7	54	Vitis vinifera	1616189_at	CF511570	hypothetical protein LOC100260741	-	6e-18	At1g75820	CLV1 (CLAVATA 1)	C.G.	S.X.	Please select
0.08	6e-8	57	Zea mays	Zm.1140.1.S1_at	BM073428	hypothetical protein LOC100279272	-	4e-14	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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