Gene omics information

Query gene ID	Contig20424_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	58.9	Contig20424_at	Contig20424	-	-	2e-12	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	S.X.	H.G.	Please select
0.91	98.1	HU11B09u_s_at	HU11B09u	-	-	5e-3	At4g20010	PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9)	S.X.	H.G.	Please select
0.83	94.0	Contig9144_at	Contig9144	-	-	1e-15	At3g20860	ATNEK5 (NIMA-RELATED KINASE5)	S.X.	H.G.	Please select
0.67	84.7	HU11B09u_at	HU11B09u	-	-	5e-3	At4g20010	PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9)	S.X.	H.G.	Please select
0.33	42.6	Contig14296_at	Contig14296	-	-	4e+0	At1g07140	SIRANBP	S.X.	H.G.	Please select
0.20	21.1	Contig12950_at	Contig12950	-	-	3e-6	At1g76510	ARID/BRIGHT DNA-binding domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.7	99.8	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
23.6	99.8	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
20.2	99.7	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
17.3	99.6	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
16.3	99.6	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
13.5	99.5	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
13.5	99.5	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
11.5	99.3	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.5	99.0	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.8	98.9	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	7e-119	426	Contig8040_at	Contig8040	-	-	6e-11	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	C.G.	S.X.	Please select
0.38	6e-101	367	HV08B14u_at	HV08B14u	-	-	2e+0	At1g09690	60S ribosomal protein L21 (RPL21C)	C.G.	S.X.	Please select
0.04	7e-2	38	Contig8247_at	Contig8247	-	-	2e-1	At1g10060	branched-chain amino acid aminotransferase 1 / branched-chain amino acid transaminase 1 (BCAT1)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig21640_at	Contig21640	-	-	5e-1	At1g78340	ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig4659_at	Contig4659	-	-	1e+0	At4g25700	BETA-OHASE 1 (BETA-HYDROXYLASE 1)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig875_s_at	Contig875	-	-	2e-3	At3g05150	sugar transporter family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig875_at	Contig875	-	-	2e-3	At3g05150	sugar transporter family protein	C.G.	S.X.	Please select
0.02	4e+0	32	HVSMEa0013L05r2_at	HVSMEa0013L05r2	-	-	1e+0	At4g03945	enzyme inhibitor/ pectinesterase	C.G.	S.X.	Please select
0.01	4e+0	32	Contig9505_at	Contig9505	-	-	2e-17	At2g27100	SE (SERRATE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	2e-12	73	Arabidopsis thaliana	At3g49680	824130	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	4e-21	103	Glycine max	GmaAffx.49521.2.S1_at	BF066739	-	-	5e-34	At5g65780	ATBCAT-5	C.G.	S.X.	Please select
0.48	4e-114	412	Oryza sativa	Os05g0558400	AK072756.1	-	Branched-chain-amino-acid aminotransferase 3,chloroplast precursor (EC 2.6.1.42) (Atbcat-3)	5e-24	At5g65780	ATBCAT-5	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	3e-34	147	Populus trichocarpa	PtpAffx.41318.1.S1_a_at	CV265728	hypothetical protein	-	3e-53	At5g65780	ATBCAT-5	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.25	2e-34	147	Triticum aestivum	TaAffx.129158.2.A1_at	CA736250	-	-	1e+0	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	C.G.	S.X.	Please select
0.07	3e-9	61	Vitis vinifera	1622060_at	BM436271	-	-	3e-32	At5g65780	ATBCAT-5	C.G.	S.X.	Please select
0.41	2e-122	438	Zea mays	Zm.2520.1.A1_at	AW400289	hypothetical protein LOC100191754	-	5e-21	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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