Gene omics information

Query gene ID	Contig2041_x_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig2041_x_at	Contig2041	-	-	1e+0	At3g61310	DNA-binding family protein	S.X.	H.G.	Please select
0.83	94.0	HVSMEg0001N20r2_at	HVSMEg0001N20r2	-	-	3e+0	At4g03050	AOP3	S.X.	H.G.	Please select
0.80	92.5	Contig2041_at	Contig2041	-	-	1e+0	At3g61310	DNA-binding family protein	S.X.	H.G.	Please select
0.77	90.8	Contig12402_at	Contig12402	-	-	3e+0	At3g05490	RALFL22 (ralf-like 22)	S.X.	H.G.	Please select
0.67	84.7	Contig6006_s_at	Contig6006	-	-	3e+0	At1g60830	U2 snRNP auxiliary factor large subunit, putative	S.X.	H.G.	Please select
0.61	78.7	Contig6005_x_at	Contig6005	-	-	3e-1	At1g20130	hydrolase, acting on ester bonds / lipase/ structural constituent of cell wall	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
40.4	99.9	GSM68898	8 h salt stressed replicate 1	GSE3097	Barley1 salinity stress study
37.6	99.9	GSM68903	27 h control replicate3	GSE3097	Barley1 salinity stress study
29.7	99.9	GSM68893	3 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
28.4	99.8	GSM68899	8 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
26.4	99.8	GSM68892	3 h salt stressed replicate 1	GSE3097	Barley1 salinity stress study
23.9	99.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
22.1	99.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
22.0	99.8	GSM68894	3 h salt stressed replicate 3	GSE3097	Barley1 salinity stress study
20.6	99.7	GSM68905	27 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
20.0	99.7	GSM68895	8 h control replicate 1	GSE3097	Barley1 salinity stress study

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1191	Contig2041_at	Contig2041	-	-	1e+0	At3g61310	DNA-binding family protein	C.G.	S.X.	Please select
0.88	0	724	Contig2044_at	Contig2044	-	-	2e+1	At5g01870	lipid transfer protein, putative	C.G.	S.X.	Please select
0.72	0	666	Contig2046_at	Contig2046	-	-	5e+0	At1g60815	RALFL7 (RALF-LIKE 7)	C.G.	S.X.	Please select
0.74	2e-155	547	HVSMEn0020F17r2_x_at	HVSMEn0020F17r2	-	-	3e+0	At2g33370	60S ribosomal protein L23 (RPL23B)	C.G.	S.X.	Please select
0.73	6e-155	545	Contig2043_s_at	Contig2043	-	-	1e+0	At2g35270	DNA-binding protein-related	C.G.	S.X.	Please select
0.04	9e-3	40	Contig698_at	Contig698	-	-	8e+0	At3g11470	4'-phosphopantetheinyl transferase family protein	C.G.	S.X.	Please select
0.06	9e-3	40	X68656_s_at	X68656	-	-	5e+0	At1g14120	2-oxoglutarate-dependent dioxygenase, putative	C.G.	S.X.	Please select
0.02	4e-2	38	Contig3867_at	Contig3867	-	-	3e-9	At1g72360	ethylene-responsive element-binding protein, putative	C.G.	S.X.	Please select
0.04	1e-1	36	rbags17d18_s_at	rbags17d18	-	-	2e+1	At5g41660	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At3g61310	825303	DNA-binding family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	HgAffx.12693.1.S1_at	CB375289	-	-	6e-2	At4g16140	proline-rich family protein	C.G.	S.X.	Please select
0.24	1e-17	91	Oryza sativa	Os11g0115100	AK119692.1	-	Lipid transfer protein	2e+0	At4g15460	glycine-rich protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	7e-3	42	Populus trichocarpa	PtpAffx.249.762.A1_at	CV261856	-	-	1e+0	At1g18760	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.73	5e-120	430	Triticum aestivum	TaAffx.130058.1.S1_x_at	AJ611761	-	-	3e-1	At3g60470	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1614573_s_at	BQ796609	hypothetical protein LOC100251313	-	4e+0	At3g23727	SCRL12 (SCR-Like 12)	C.G.	S.X.	Please select
0.13	3e-8	57	Zea mays	Zm.4168.1.A1_at	BM337240	hypothetical protein LOC100274469	-	7e+0	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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