Gene omics information

Query gene ID	Contig20287_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	80.3	Contig20287_at	Contig20287	-	-	6e-1	At1g03810	DNA-binding protein-related	S.X.	H.G.	Please select
0.37	47.9	Contig10495_s_at	Contig10495	-	-	4e-3	At3g16190	isochorismatase hydrolase family protein	S.X.	H.G.	Please select
0.31	38.6	Contig15499_at	Contig15499	-	-	3e-1	At1g23950	unknown protein	S.X.	H.G.	Please select
0.28	35.5	Contig9431_at	Contig9431	-	-	1e-1	At1g42990	ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60)	S.X.	H.G.	Please select
0.25	28.9	Contig7905_at	Contig7905	-	-	3e+0	At4g37880	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.20	21.1	Contig15041_at	Contig15041	-	-	2e+0	At3g55740	PROT2 (PROLINE TRANSPORTER 2)	S.X.	H.G.	Please select
0.20	21.1	Contig4941_s_at	Contig4941	-	-	3e-2	At4g17190	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2)	S.X.	H.G.	Please select
0.19	19.6	Contig15737_at	Contig15737	-	-	1e-1	At3g30370	-	S.X.	H.G.	Please select
0.19	19.6	Contig21290_at	Contig21290	-	-	2e+0	At5g01910	unknown protein	S.X.	H.G.	Please select
0.17	16.9	Contig11605_at	Contig11605	-	-	4e-8	At5g47310	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.0	99.5	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
13.7	99.5	GSM160464	drought control rep1	GSE6990	Barley drought stress
10.9	99.2	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
10.7	99.2	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
10.0	99.1	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
9.5	99.0	GSM261028	ABA-Late-rep2	GSE10328	ABA experiment
9.2	99.0	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment
8.8	98.9	GSM68899	8 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
8.6	98.8	GSM68892	3 h salt stressed replicate 1	GSE3097	Barley1 salinity stress study
8.3	98.8	GSM261027	ABA-Late-rep1	GSE10328	ABA experiment

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-2	38	Contig16892_at	Contig16892	-	-	3e-1	At5g40790	unknown protein	C.G.	S.X.	Please select
0.02	7e-2	38	Contig21170_at	Contig21170	-	-	8e+0	At5g56910	-	C.G.	S.X.	Please select
0.02	7e-2	38	Contig2532_at	Contig2532	-	-	5e-8	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	C.G.	S.X.	Please select
0.02	3e-1	36	Contig8172_at	Contig8172	-	-	2e+0	At5g62350	invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)	C.G.	S.X.	Please select
0.02	3e-1	36	Contig1861_at	Contig1861	-	-	3e-3	At3g49960	peroxidase, putative	C.G.	S.X.	Please select
0.01	3e-1	36	Contig12275_at	Contig12275	-	-	3e-3	At4g39090	RD19 (RESPONSIVE TO DEHYDRATION 19)	C.G.	S.X.	Please select
0.01	3e-1	36	Contig4206_at	Contig4206	FIDDLEHEAD very long chain fatty acid condensing enzyme FDH;1-like	-	4e-3	At2g26250	KCS10 (3-KETOACYL-COA SYNTHASE 10)	C.G.	S.X.	Please select
0.02	3e-1	36	Contig21684_at	Contig21684	-	-	1e+0	At4g38740	ROC1 (ROTAMASE CYP 1)	C.G.	S.X.	Please select
0.02	3e-1	36	Contig14132_at	Contig14132	-	-	2e+0	At5g27860	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	36	Arabidopsis thaliana	At1g03810	839403	DNA-binding protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;POA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-1	38	Glycine max	Gma.5566.1.S1_at	AW349097	-	-	6e+0	Atmg00620	-	C.G.	S.X.	Please select
0.20	1e-18	95	Oryza sativa	Os.4403.1.A1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	8e-1	36	Populus trichocarpa	PtpAffx.218375.1.S1_at	pmrna33969	-	-	3e-1	At4g29470	phospholipase A2, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.28	9e-71	268	Triticum aestivum	TaAffx.57448.1.S1_x_at	CA629019	-	-	4e+0	At5g25080	-	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1609919_at	CB343673	-	-	4e+0	At5g42910	basic leucine zipper transcription factor (BZIP15)	C.G.	S.X.	Please select
0.02	2e-1	36	Zea mays	Zm.14507.3.A1_at	BG266679	-	-	5e+0	At5g44565	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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