CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig20248_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.95 99.2 Contig20248_at Contig20248 - - 5e+0 At3g16880 F-box protein-related S.X. H.G.
0.43 56.4 Contig11766_at Contig11766 - - 1e-2 At5g50400 PAP27 (PURPLE ACID PHOSPHATASE 27) S.X. H.G.
0.35 45.1 Contig17435_at Contig17435 - - 9e-2 At1g75980 - S.X. H.G.
0.35 45.1 Contig9449_s_at Contig9449 - - 3e-18 At2g27350 OTU-like cysteine protease family protein S.X. H.G.
0.34 43.6 Contig17131_at Contig17131 - - 4e+0 At5g44650 unknown protein S.X. H.G.
0.34 43.6 Contig18946_at Contig18946 - - 1e+0 At5g65220 ribosomal protein L29 family protein S.X. H.G.
0.33 42.6 rbaal22m07_at rbaal22m07 - - 2e-1 At1g06440 ubiquitin thiolesterase S.X. H.G.
0.32 40.3 Contig9392_at Contig9392 - - 5e+0 At5g62780 DNAJ heat shock N-terminal domain-containing protein S.X. H.G.
0.32 40.3 Contig12784_at Contig12784 - - 2e-10 At1g28520 VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN) S.X. H.G.
0.32 40.3 Contig11095_at Contig11095 - - 2e-4 At3g19895 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.6 99.3 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
10.6 99.2 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
9.7 99.0 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.2 98.0 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.6 97.7 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.5 97.6 GSM238416 Endosperm 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.1 97.3 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.0 97.2 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.6 96.8 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.2 96.3 GSM261021 ABA-Control-rep1 GSE10328 ABA experiment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 4e-2 38 EBpi07_SQ001_A11_at EBpi07_SQ001_A11 - - 4e+0 At5g43850 ARD4 C.G. S.X.
0.02 1e-1 36 Contig12638_at Contig12638 - - 3e+0 At5g19790 RAP2.11 (related to AP2 11) C.G. S.X.
0.03 6e-1 34 HI01B18w_s_at HI01B18w - - 1e+0 At3g21270 ADOF2 C.G. S.X.
0.04 6e-1 34 Contig223_x_at Contig223 - - 8e-1 At5g56900 CwfJ-like family protein / zinc finger (CCCH-type) family protein C.G. S.X.
0.04 6e-1 34 Contig223_s_at Contig223 - - 8e-1 At5g56900 CwfJ-like family protein / zinc finger (CCCH-type) family protein C.G. S.X.
0.01 2e+0 32 Contig2168_s_at Contig2168 - - 2e-63 At4g13930 SHM4 (serine hydroxymethyltransferase 4) C.G. S.X.
0.02 2e+0 32 Contig10064_at Contig10064 - - 2e+0 At2g12465 LCR50 (Low-molecular-weight cysteine-rich 50) C.G. S.X.
0.03 2e+0 32 Contig18326_at Contig18326 - - 4e+0 At4g22930 PYR4 (PYRIMIDIN 4) C.G. S.X.
0.01 2e+0 32 Contig13631_at Contig13631 - - 5e-2 At3g20720 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e+0 32 Arabidopsis thaliana At3g16880 820943 F-box protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO - - - C.G. S.X.
0.03 4e-1 36 Glycine max HgAffx.9846.1.S1_at CB378655 - - 5e+0 At3g06270 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.14 7e-19 95 Oryza sativa Os04g0434600 AK062857.1 - Kinesin, motor region domain containing protein 1e+0 At3g17470 RelA/SpoT domain-containing protein / calcium-binding EF-hand family protein C.G. S.X.
0.03 7e+0 32 Populus trichocarpa PtpAffx.204042.1.S1_s_at pmrna7975 hypothetical protein - 1e+0 At4g08640 ATP binding / protein binding C.G. S.X.
0.06 1e+0 34 Triticum aestivum TaAffx.111010.1.S1_at CA649873 - - 9e-1 At2g30680 - C.G. S.X.
0.04 1e+0 32 Vitis vinifera 1620021_at CB969237 hypothetical protein LOC100246037 - 4e-37 At1g48030 mtLPD1 (mitochondrial lipoamide dehydrogenase 1) C.G. S.X.
0.10 3e-5 48 Zea mays Zm.4625.1.A1_at AI737394 - - 8e-1 At1g78630 emb1473 (embryo defective 1473) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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