Gene omics information

Query gene ID	Contig20244_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.0	Contig20244_at	Contig20244	-	-	2e-4	At4g37200	HCF164	S.X.	H.G.	Please select
0.73	88.7	Contig15381_at	Contig15381	-	-	5e-14	At5g14040	mitochondrial phosphate transporter	S.X.	H.G.	Please select
0.73	88.7	Contig7157_at	Contig7157	-	-	2e-11	At2g24500	FZF	S.X.	H.G.	Please select
0.60	77.3	Contig16344_at	Contig16344	-	-	2e+0	At3g15410	leucine-rich repeat family protein	S.X.	H.G.	Please select
0.44	58.9	Contig12173_at	Contig12173	-	-	7e+0	At5g10710	protein binding	S.X.	H.G.	Please select
0.21	22.6	Contig5032_at	Contig5032	-	-	4e-1	At4g38210	ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.3	98.8	GSM398278	Moroc9-75_1d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.2	98.0	GSM398276	Moroc9-75_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.7	97.7	GSM398273	Moroc9-75_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.7	97.7	GSM398255	Martin_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.5	97.6	GSM398281	Moroc9-75_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.4	97.5	GSM398282	Moroc9-75_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.2	97.4	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.1	97.3	GSM398257	Martin_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.9	97.1	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.9	97.1	GSM398277	Moroc9-75_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-1	34	Contig8018_at	Contig8018	-	-	2e-4	At2g03800	GEK1 (GEKO1)	C.G.	S.X.	Please select
0.04	4e-1	34	Contig14437_at	Contig14437	-	-	1e+0	At4g19640	ARA7	C.G.	S.X.	Please select
0.02	4e-1	34	Contig12862_at	Contig12862	-	-	4e-2	At3g58570	DEAD box RNA helicase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Contig9030_at	Contig9030	-	-	7e-1	At5g60840	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Contig23071_at	Contig23071	-	-	2e+0	At1g13195	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	2e+0	32	HB09B07w_at	HB09B07w	-	-	6e-1	At5g24640	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Contig9113_s_at	Contig9113	-	-	2e-26	At5g11980	conserved oligomeric Golgi complex component-related / COG complex component-related	C.G.	S.X.	Please select
0.01	2e+0	32	Contig9113_at	Contig9113	-	-	2e-26	At5g11980	conserved oligomeric Golgi complex component-related / COG complex component-related	C.G.	S.X.	Please select
0.01	6e+0	30	Contig8523_s_at	Contig8523	-	-	9e-13	At3g52820	PAP22 (PURPLE ACID PHOSPHATASE 22)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	2e-4	46	Arabidopsis thaliana	At4g37200	829874	HCF164	Encodes thioredoxin-like protein with disulfide reductase activity that is involved in the biogenesis of the plastid cytochrome b6f complex. Protein is located in the thylakoid membrane with the C-terminal hydrophilic portion, containing the thioredoxin like domain, extending into the thylakoid lumen.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	1e-6	54	Glycine max	Gma.8734.1.S1_at	CA937141	-	-	1e-41	At4g37200	HCF164	C.G.	S.X.	Please select
0.23	5e-59	228	Oryza sativa	Os03g0767500	AK104279.1	-	Thioredoxin-related domain containing protein	9e-28	At4g37200	HCF164	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Populus trichocarpa	PtpAffx.65702.1.A1_at	AJ779667	hypothetical protein	-	6e-31	At4g26230	60S ribosomal protein L31 (RPL31B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	2e-23	109	Triticum aestivum	TaAffx.85169.1.S1_at	CA686354	-	-	2e+0	At1g54410	dehydrin family protein	C.G.	S.X.	Please select
0.15	2e-2	38	Vitis vinifera	1614616_at	CA817956	hypothetical protein LOC100252131	-	5e-12	At4g37200	HCF164	C.G.	S.X.	Please select
0.04	1e+0	32	Zea mays	ZmAffx.746.1.A1_at	AI745786	-	-	8e-1	At3g60600	VAP (VESICLE ASSOCIATED PROTEIN)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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