Gene omics information

Query gene ID	Contig20219_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	89.5	Contig20219_at	Contig20219	-	-	1e-2	At3g24770	CLE41 (CLAVATA3/ESR-RELATED 41)	S.X.	H.G.	Please select
0.63	80.3	Contig11287_s_at	Contig11287	-	-	1e+0	At5g15960	KIN1	S.X.	H.G.	Please select
0.57	74.9	Contig18431_at	Contig18431	-	-	9e-2	At1g78530	protein kinase family protein	S.X.	H.G.	Please select
0.46	61.0	Contig10972_at	Contig10972	-	-	1e-5	At1g32500	ATNAP6 (NON-INTRINSIC ABC PROTEIN 6)	S.X.	H.G.	Please select
0.46	61.0	Contig21671_at	Contig21671	-	-	1e+0	At4g15260	UDP-glucoronosyl/UDP-glucosyl transferase family protein	S.X.	H.G.	Please select
0.43	56.4	Contig20711_at	Contig20711	-	-	1e+0	At3g50337	unknown protein	S.X.	H.G.	Please select
0.32	40.3	Contig6309_at	Contig6309	-	-	6e-1	At5g66815	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.2	99.2	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.1	98.9	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
7.1	98.4	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
6.4	98.1	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.8	97.8	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.1	97.3	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
4.9	97.1	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.7	96.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	3e-8	57	Contig25076_at	Contig25076	-	-	1e+0	At5g47520	AtRABA5a (Arabidopsis Rab GTPase homolog A5a)	C.G.	S.X.	Please select
0.01	1e-1	36	Contig1664_at	Contig1664	-	-	5e-25	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	C.G.	S.X.	Please select
0.03	4e-1	34	Contig21959_at	Contig21959	-	-	1e+0	At1g12663	-	C.G.	S.X.	Please select
0.03	4e-1	34	Contig9794_at	Contig9794	-	-	4e-1	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	C.G.	S.X.	Please select
0.03	2e+0	32	Contig15655_at	Contig15655	-	-	2e+0	At1g08180	unknown protein	C.G.	S.X.	Please select
0.05	2e+0	32	HK04M17r_at	HK04M17r	-	-	7e+0	At2g07825	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig4469_at	Contig4469	-	-	4e-63	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	C.G.	S.X.	Please select
0.01	2e+0	32	Contig2803_at	Contig2803	-	-	8e-35	At2g30970	ASP1 (ASPARTATE AMINOTRANSFERASE 1)	C.G.	S.X.	Please select
0.02	7e+0	30	Contig8619_at	Contig8619	-	-	7e-16	At4g35640	ATSERAT3	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-2	40	Arabidopsis thaliana	At3g24770	822075	CLE41 (CLAVATA3/ESR-RELATED 41)	Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini. The C-terminal 12 amino acid sequence of CLE41 is identical to that of a dodeca peptide (TDIF, tracheary element differentiation inhibitory factor) isolated from Arabidopsis and functions as a suppressor of plant stem cell differentiation. TDIF sequence is also identical to the C-terminal 12 amino acids of CLE44 (At4g13195).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	4e-13	75	Glycine max	Gma.1909.1.S1_at	AW306179	-	-	5e-1	At3g28420	unknown protein	C.G.	S.X.	Please select
0.04	1e-1	38	Oryza sativa	Os10g0159700	BI804873	-	Heat shock protein Hsp20 domain containing protein	1e+0	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	9e-14	77	Populus trichocarpa	PtpAffx.207927.1.S1_at	pmrna15733	hypothetical protein	-	2e+0	At4g18975	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.44	2e-45	182	Triticum aestivum	Ta.26170.1.S1_at	BJ221660	Glutaredoxin	-	1e-1	At1g22230	unknown protein	C.G.	S.X.	Please select
0.08	3e-13	73	Vitis vinifera	1618399_at	CF214752	-	-	2e-1	At2g33860	ETT (ETTIN)	C.G.	S.X.	Please select
0.08	4e-4	44	Zea mays	Zm.15330.1.A1_at	CB350785	hypothetical protein LOC100278759	-	4e+0	At3g12955	auxin-responsive protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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