Gene omics information

Query gene ID	Contig20148_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.7	Contig20148_s_at	Contig20148	-	-	2e-2	At2g33400	unknown protein	S.X.	H.G.	Please select
0.91	98.1	Contig20825_at	Contig20825	-	-	5e-1	At1g62980	ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18)	S.X.	H.G.	Please select
0.91	98.1	Contig17903_at	Contig17903	-	-	1e-3	At5g26230	unknown protein	S.X.	H.G.	Please select
0.80	92.5	Contig11598_at	Contig11598	-	-	2e-10	At1g32360	zinc finger (CCCH-type) family protein	S.X.	H.G.	Please select
0.67	84.7	Contig14852_at	Contig14852	-	-	2e+0	At1g47250	PAF2	S.X.	H.G.	Please select
0.50	66.9	EBes01_SQ003_N19_at	EBes01_SQ003_N19	-	-	2e-1	At5g57850	aminotransferase class IV family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.5	98.2	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
6.1	98.0	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
4.1	96.2	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
3.8	95.7	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
3.8	95.7	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.7	95.5	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6	95.3	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
3.6	95.3	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5	95.1	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	1247	Contig20148_at	Contig20148	-	-	2e-2	At2g33400	unknown protein	C.G.	S.X.	Please select
0.08	5e-20	97	Contig16646_at	Contig16646	-	-	6e-17	At2g24990	RIO1 family protein	C.G.	S.X.	Please select
0.14	3e-15	81	HU09K16u_at	HU09K16u	-	-	3e-1	At5g40500	unknown protein	C.G.	S.X.	Please select
0.03	1e-2	40	Contig2537_at	Contig2537	-	-	1e-29	At3g11730	ATFP8	C.G.	S.X.	Please select
0.03	1e-2	40	Contig4205_at	Contig4205	-	-	7e+0	At5g23140	NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig26444_at	Contig26444	-	-	2e+0	At3g55990	ESK1 (ESKIMO 1)	C.G.	S.X.	Please select
0.02	6e-1	34	Contig25552_at	Contig25552	-	-	4e-11	At4g35020	ARAC3 (ARABIDOPSIS RAC-LIKE 3)	C.G.	S.X.	Please select
0.02	6e-1	34	Contig16112_at	Contig16112	-	-	6e-38	At3g27190	uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative	C.G.	S.X.	Please select
0.03	6e-1	34	HVSMEg0017O10r2_s_at	HVSMEg0017O10r2	-	-	4e+0	At4g13955	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-2	40	Arabidopsis thaliana	At2g33400	817904	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	HgAffx.23823.1.S1_at	BF014026	-	-	5e-1	At2g46490	unknown protein	C.G.	S.X.	Please select
0.04	4e-2	40	Oryza sativa	Os05g0546600	9633.m04407	-	Forkhead-associated domain containing protein	1e-7	At3g20550	DDL (DAWDLE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e+0	34	Populus trichocarpa	PtpAffx.4110.1.S1_a_at	CV228849	hypothetical protein	-	8e-71	At4g17530	ATRAB1C	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	2e-8	59	Triticum aestivum	TaAffx.108392.1.S1_at	CA688825	-	-	9e-1	At3g54890	LHCA1	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1608659_s_at	CF513313	hypothetical protein LOC100258355	-	7e-43	At1g71190	SAG18 (SENESCENCE ASSOCIATED GENE 18)	C.G.	S.X.	Please select
0.03	5e-1	34	Zea mays	Zm.14497.16.S1_s_at	BE475718	-	-	4e-12	At4g15000	60S ribosomal protein L27 (RPL27C)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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