CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig2012_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 92.5 Contig2012_s_at Contig2012 - - 2e-21 At3g46230 ATHSP17.4 S.X. H.G.
0.60 77.3 EBes01_SQ002_O07_at EBes01_SQ002_O07 - - 3e+0 At4g00880 auxin-responsive family protein S.X. H.G.
0.35 45.1 Contig20148_s_at Contig20148 - - 2e-2 At2g33400 unknown protein S.X. H.G.
0.22 24.2 HVSMEm0007D17r2_at HVSMEm0007D17r2 - - 5e+0 At5g59050 unknown protein S.X. H.G.
0.11 9.4 Contig7564_at Contig7564 - - 4e-5 At2g32080 PUR ALPHA-1 S.X. H.G.
0.10 8.4 HA05g22r_x_at HA05g22r - - 4e-2 At1g47960 C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
43.1 99.9 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
38.7 99.9 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
23.4 99.8 GSM398279 Moroc9-75_3d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
21.8 99.8 GSM398280 Moroc9-75_3d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
10.4 99.2 GSM398281 Moroc9-75_5d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
8.5 98.8 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
7.8 98.6 GSM398282 Moroc9-75_5d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.8 98.6 GSM261044 before 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.1 98.4 GSM419981 Seed_Rep1 GSE16754 Comparative transcriptional profiling of organs of the barley spike
7.1 98.4 GSM440975 Control seed_Rep1 GSE17669 Gene expression in the barley spike during drought stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.70 0 952 HY03K23u_at HY03K23u - - 1e-12 At3g46230 ATHSP17.4 C.G. S.X.
0.55 0 664 Contig2006_s_at Contig2006 - - 4e-26 At3g46230 ATHSP17.4 C.G. S.X.
0.43 9e-121 432 Contig2010_at Contig2010 - - 1e-10 At1g53540 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) C.G. S.X.
0.34 9e-47 186 Contig2007_s_at Contig2007 - - 3e-5 At1g53540 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) C.G. S.X.
0.35 3e-37 155 Contig2008_s_at Contig2008 - - 2e-5 At1g53540 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) C.G. S.X.
0.32 5e-36 151 Contig2004_s_at Contig2004 - - 9e-5 At2g29500 17.6 kDa class I small heat shock protein (HSP17.6B-CI) C.G. S.X.
0.13 3e-31 135 HB18H23r_s_at HB18H23r - - 3e+0 At5g01600 ATFER1 C.G. S.X.
0.19 7e-20 97 Contig2014_at Contig2014 - - 1e-5 At1g07400 17.8 kDa class I heat shock protein (HSP17.8-CI) C.G. S.X.
0.10 1e-18 93 Contig15445_at Contig15445 - - 3e-2 At1g53540 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 2e-21 103 Arabidopsis thaliana At3g46230 823768 ATHSP17.4 member of the class I small heat-shock protein (sHSP) family, which accounts for the majority of sHSPs in maturing seeds - - - C.G. S.X.
0.19 4e-5 50 Glycine max GmaAffx.35952.1.S1_at BE823689 - - 3e-4 At5g59720 HSP18.2 (heat shock protein 18.2) C.G. S.X.
0.52 6e-128 458 Oryza sativa Os03g0267000 AU165294 - Low molecular mass heat shock protein Oshsp18.0 6e-3 At5g59720 HSP18.2 (heat shock protein 18.2) C.G. S.X.
0.22 1e-14 81 Populus trichocarpa PtpAffx.21139.1.S1_at BU889382 hypothetical protein - 2e-15 At1g07400 17.8 kDa class I heat shock protein (HSP17.8-CI) C.G. S.X.
0.72 3e-178 624 Triticum aestivum Ta.4427.1.S1_at CD491093 - - 7e-9 At1g07400 17.8 kDa class I heat shock protein (HSP17.8-CI) C.G. S.X.
0.22 1e-10 65 Vitis vinifera 1612385_at CB350287 hypothetical protein LOC100244376 - 5e-16 At2g29500 17.6 kDa class I small heat shock protein (HSP17.6B-CI) C.G. S.X.
0.49 3e-108 391 Zea mays Zm.2361.1.A1_at BM381388 hypothetical protein LOC100191552 - 3e-17 At1g53540 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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