Gene omics information

Query gene ID	Contig20103_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	72.0	Contig20103_at	Contig20103	-	-	4e+0	At5g20460	unknown protein	S.X.	H.G.	Please select
0.83	94.0	Contig10382_s_at	Contig10382	-	-	6e-38	At5g45190	cyclin family protein	S.X.	H.G.	Please select
0.80	92.5	Contig10383_at	Contig10383	-	-	6e-4	At2g22540	SVP (SHORT VEGETATIVE PHASE)	S.X.	H.G.	Please select
0.73	88.7	Contig10000_s_at	Contig10000	-	-	8e+0	At5g05113	unknown protein	S.X.	H.G.	Please select
0.73	88.7	Contig10001_at	Contig10001	-	-	9e-6	At3g01410	RNase H domain-containing protein	S.X.	H.G.	Please select
0.67	84.7	Contig10380_at	Contig10380	-	-	4e-1	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
40.5	99.9	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
32.8	99.9	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
17.9	99.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.3	99.1	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
9.8	99.1	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
9.6	99.0	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.7	98.9	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
6.8	98.3	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
6.6	98.2	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
6.4	98.1	GSM161220	cold treatment rep2	GSE6993	Barley low temperature stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e-2	38	EBes01_SQ003_M14_at	EBes01_SQ003_M14	-	-	3e+0	At3g17980	C2 domain-containing protein	C.G.	S.X.	Please select
0.04	1e-1	36	Contig1790_at	Contig1790	-	-	2e+1	At5g10780	-	C.G.	S.X.	Please select
0.03	4e-1	34	Contig10142_at	Contig10142	-	-	1e-1	At1g12665	-	C.G.	S.X.	Please select
0.01	2e+0	32	Contig4221_at	Contig4221	-	-	4e-9	At3g29810	COBL2 (COBRA-LIKE PROTEIN 2 PRECURSOR)	C.G.	S.X.	Please select
0.04	2e+0	32	Contig20418_at	Contig20418	-	-	1e+1	At5g53045	-	C.G.	S.X.	Please select
0.01	2e+0	32	Contig2803_at	Contig2803	-	-	8e-35	At2g30970	ASP1 (ASPARTATE AMINOTRANSFERASE 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig610_at	Contig610	-	-	1e-1	At3g01500	CA1 (CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.02	7e+0	30	Contig22472_at	Contig22472	-	-	2e+0	At5g07580	DNA binding / transcription factor	C.G.	S.X.	Please select
0.02	7e+0	30	Contig8361_at	Contig8361	-	-	5e-4	At5g62190	PRH75	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	4e+0	32	Arabidopsis thaliana	At5g20460	832168	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	GmaAffx.65235.1.A1_at	BU544694	-	-	4e+0	At3g12510	unknown protein	C.G.	S.X.	Please select
0.01	3e-2	40	Oryza sativa	Os04g0503500	AK099404.1	-	Leucine-rich repeat, cysteine-containing subtypecontaining protein	5e-3	At1g15740	leucine-rich repeat family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	36	Populus trichocarpa	PtpAffx.159970.1.A1_at	CV253279	-	-	8e-1	At1g74060	60S ribosomal protein L6 (RPL6B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	9e-1	34	Triticum aestivum	TaAffx.112144.1.S1_at	CA626715	-	-	1e-9	At2g06990	HEN2 (hua enhancer 2)	C.G.	S.X.	Please select
0.05	1e+0	32	Vitis vinifera	1611807_at	CD798607	hypothetical protein LOC100264691	-	2e+0	At4g34320	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	ZmAffx.1453.1.S1_at	11990232-20	-	-	3e-46	Atcg00330	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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