Gene omics information

Query gene ID	Contig2008_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.76	89.8	Contig2008_s_at	Contig2008	-	-	2e-5	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	S.X.	H.G.	Please select
0.51	67.5	Contig14227_at	Contig14227	-	-	7e-1	At2g30810	gibberellin-regulated family protein	S.X.	H.G.	Please select
0.51	67.5	rbaal31o11_x_at	rbaal31o11	-	-	5e+0	At4g31050	lipoyltransferase (LIP2p)	S.X.	H.G.	Please select
0.51	67.5	HV14M05r_at	HV14M05r	-	-	9e-2	At5g38490	DNA binding	S.X.	H.G.	Please select
0.50	66.9	Contig26035_at	Contig26035	-	-	2e+0	At1g10600	-	S.X.	H.G.	Please select
0.47	62.2	HS05N06r_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.46	61.0	HA08g16r_at	HA08g16r	-	-	8e-1	At2g04378	beta-galactosidase	S.X.	H.G.	Please select
0.44	58.9	HVSMEb0002K02r2_s_at	HVSMEb0002K02r2	-	-	4e+0	At5g07500	PEI1	S.X.	H.G.	Please select
0.44	58.9	Contig23664_at	Contig23664	-	-	1e+0	At3g51080	zinc finger (GATA type) family protein	S.X.	H.G.	Please select
0.43	56.4	Contig12986_at	Contig12986	-	-	7e-13	At3g28007	nodulin MtN3 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
50.1	99.9	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
50.1	99.9	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
45.0	99.9	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
45.0	99.9	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
44.9	99.9	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
44.9	99.9	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
42.4	99.9	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
36.7	99.9	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
31.8	99.9	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
2.0	89.0	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.79	0	720	Contig2004_s_at	Contig2004	-	-	9e-5	At2g29500	17.6 kDa class I small heat shock protein (HSP17.6B-CI)	C.G.	S.X.	Please select
0.64	0	684	Contig2007_s_at	Contig2007	-	-	3e-5	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	C.G.	S.X.	Please select
0.90	0	644	Contig2002_at	Contig2002	-	-	6e-6	At5g59720	HSP18.2 (heat shock protein 18.2)	C.G.	S.X.	Please select
0.39	1e-137	488	Contig2014_at	Contig2014	-	-	1e-5	At1g07400	17.8 kDa class I heat shock protein (HSP17.8-CI)	C.G.	S.X.	Please select
0.38	1e-75	282	EBro08_SQ011_I03_at	EBro08_SQ011_I03	-	-	3e+0	At2g46540	unknown protein	C.G.	S.X.	Please select
0.39	2e-44	178	Contig2006_s_at	Contig2006	-	-	4e-26	At3g46230	ATHSP17.4	C.G.	S.X.	Please select
0.35	2e-37	155	Contig2012_s_at	Contig2012	-	-	2e-21	At3g46230	ATHSP17.4	C.G.	S.X.	Please select
0.31	9e-37	153	Contig2010_at	Contig2010	-	-	1e-10	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	C.G.	S.X.	Please select
0.36	1e-26	119	HY03K23u_at	HY03K23u	-	-	1e-12	At3g46230	ATHSP17.4	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	2e-5	50	Arabidopsis thaliana	At1g53540	841789	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	F:unknown;P:response to heat;C:cellular_component unknown;BPOFAM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	1e-13	77	Glycine max	GmaAffx.25859.1.S1_at	AW569963	-	-	8e-1	At2g29500	17.6 kDa class I small heat shock protein (HSP17.6B-CI)	C.G.	S.X.	Please select
0.58	2e-102	373	Oryza sativa	OsAffx.10905.3.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	5e-10	65	Populus trichocarpa	PtpAffx.21139.1.S1_at	BU889382	hypothetical protein	-	2e-15	At1g07400	17.8 kDa class I heat shock protein (HSP17.8-CI)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.79	0	759	Triticum aestivum	Ta.28631.1.S1_at	BQ804592	heat shock protein 16.9	-	4e-4	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	C.G.	S.X.	Please select
0.33	3e-26	117	Vitis vinifera	1612385_at	CB350287	hypothetical protein LOC100244376	-	5e-16	At2g29500	17.6 kDa class I small heat shock protein (HSP17.6B-CI)	C.G.	S.X.	Please select
0.56	4e-91	333	Zea mays	Zm.2482.1.A1_at	BM333007	16.9 kDa class I heat shock protein 1	-	1e-4	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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