Gene omics information

Query gene ID	Contig20086_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	75.8	Contig20086_s_at	Contig20086	-	-	1e+0	At5g57570	-	S.X.	H.G.	Please select
0.50	66.9	Contig7267_at	Contig7267	-	-	1e-3	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	S.X.	H.G.	Please select
0.50	66.9	Contig21692_at	Contig21692	-	-	3e+0	At2g35970	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	S.X.	H.G.	Please select
0.47	62.2	Contig13204_at	Contig13204	-	-	6e-1	At2g03570	unknown protein	S.X.	H.G.	Please select
0.38	49.5	Contig9680_at	Contig9680	-	-	6e-2	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	S.X.	H.G.	Please select
0.29	35.5	Contig8795_at	Contig8795	-	-	6e-1	At2g26500	cytochrome b6f complex subunit (petM), putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.1	99.4	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.9	99.4	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.2	99.4	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.8	99.3	GSM261063	Xantha s-46 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.9	99.2	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.8	99.2	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.3	99.1	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.3	99.1	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.1	98.4	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.6	98.2	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.83	0	716	Contig21803_at	Contig21803	-	-	1e+0	At5g57570	-	C.G.	S.X.	Please select
0.08	6e-4	44	EBpi01_SQ002_G19_at	EBpi01_SQ002_G19	-	-	2e+0	At3g16440	ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B)	C.G.	S.X.	Please select
0.02	1e-1	36	Contig4096_at	Contig4096	-	-	5e-70	At3g45300	IVD (ISOVALERYL-COA-DEHYDROGENASE)	C.G.	S.X.	Please select
0.01	1e-1	36	Contig5326_at	Contig5326	-	-	2e-11	At4g38600	KAK (KAKTUS)	C.G.	S.X.	Please select
0.03	6e-1	34	HO11L24S_at	HO11L24S	-	-	5e+0	At5g18900	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.03	6e-1	34	HVSMEg0009L10r2_at	HVSMEg0009L10r2	-	-	1e+0	At2g18670	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	6e-1	34	Contig13535_at	Contig13535	-	-	1e-23	At1g47740	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Contig10942_at	Contig10942	-	-	3e+0	At5g39330	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig20673_at	Contig20673	-	-	2e+0	At5g63580	FLS2 (FLAVONOL SYNTHASE 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At5g57570	835861	-	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-1	36	Glycine max	Gma.14269.1.S1_at	CD404579	-	-	2e-18	At3g57785	unknown protein	C.G.	S.X.	Please select
0.03	6e-1	36	Oryza sativa	Os07g0542850	9632.m03998	-	-	2e+1	At5g54990	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	7e-6	52	Populus trichocarpa	PtpAffx.90019.1.S1_at	DN500062	argonaute protein group	-	7e-16	At1g48410	AGO1 (ARGONAUTE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.23	1e-9	63	Triticum aestivum	Ta.19464.1.S1_at	CA600105	-	-	2e-1	At3g13710	PRA1.F4 (PRENYLATED RAB ACCEPTOR 1.F4)	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1607189_at	CF405205	hypothetical protein LOC100261385	-	2e-2	At4g38190	ATCSLD4	C.G.	S.X.	Please select
0.03	5e-1	34	Zea mays	Zm.3188.1.A1_at	BM340302	50S ribosomal protein L40	-	2e-3	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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