CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig20055_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig20055_at Contig20055 - - 4e+0 At4g26965 NADH:ubiquinone oxidoreductase family protein S.X. H.G.
0.25 28.9 Contig10581_at Contig10581 - - 3e-5 At4g38570 PIS2 (PROBABLE CDP-DIACYLGLYCEROL--INOSITOL 3-PHOSPHATIDYLTRANSFERASE 2) S.X. H.G.
0.02 1.8 HVSMEb0001J09r2_at HVSMEb0001J09r2 - - 7e+0 At5g45710 RHA1 (ROOT HANDEDNESS 1) S.X. H.G.
0.01 1.1 HVSMEn0001D07r2_at HVSMEn0001D07r2 - - 6e-1 At2g25260 unknown protein S.X. H.G.
0.01 1.1 HC113E08_SK_at HC113E08_SK - - 7e-2 At5g50490 NF-YC5 (NUCLEAR FACTOR Y, SUBUNIT C5) S.X. H.G.
0.00 0.2 HK06G13r_s_at HK06G13r - - 6e+0 At3g02410 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.2 99.4 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
8.6 98.8 GSM282028 Malting_day1_Merit_rep1 GSE11200 Expression data from malting barley seeds
8.1 98.7 GSM282027 Malting_day1_Legacy_rep2 GSE11200 Expression data from malting barley seeds
7.5 98.6 GSM238438 Embryo 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.5 98.6 GSM146377 Maythorpe shoot Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.8 98.3 GSM282029 Malting_day1_Merit_rep3 GSE11200 Expression data from malting barley seeds
6.6 98.2 GSM282026 Malting_day1_Legacy_rep4 GSE11200 Expression data from malting barley seeds
6.2 98.0 GSM146379 Maythorpe shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.0 97.9 GSM146373 Golden Promise shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.7 97.7 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e-1 34 HU10P15u_at HU10P15u - - 5e-2 At2g35200 unknown protein C.G. S.X.
0.02 5e-1 34 Contig8697_at Contig8697 - - 6e-4 At5g58140 PHOT2 (PHOTOTROPIN 2) C.G. S.X.
0.03 5e-1 34 Contig22512_at Contig22512 - - 1e-2 At5g41760 nucleotide-sugar transporter family protein C.G. S.X.
0.03 5e-1 34 Contig8698_s_at Contig8698 - - 1e-16 At5g58140 PHOT2 (PHOTOTROPIN 2) C.G. S.X.
0.02 2e+0 32 Contig18212_at Contig18212 - - 6e-1 At5g65320 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.03 2e+0 32 AF474373_CDS-4_at AF474373_CDS-4 - - 2e+0 At4g27760 FEY (FOREVER YOUNG) C.G. S.X.
0.03 2e+0 32 Contig21917_at Contig21917 - - 5e+0 At5g27860 unknown protein C.G. S.X.
0.01 2e+0 32 Contig15131_at Contig15131 - - 9e-1 At4g15415 ATB' GAMMA C.G. S.X.
0.01 2e+0 32 Contig9675_at Contig9675 - - 2e-20 At2g45540 WD-40 repeat family protein / beige-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e+0 32 Arabidopsis thaliana At4g26965 828804 NADH:ubiquinone oxidoreductase family protein F:electron carrier activity, oxidoreductase activity, NADH dehydrogenase (ubiquinone) activity;P:biological_process unknown;C:membrane;OMFBP - - - C.G. S.X.
0.05 3e-1 36 Glycine max Gma.4802.1.S1_at CA938587 - - 4e-1 At2g07772 unknown protein C.G. S.X.
0.13 3e-36 153 Oryza sativa Os01g0280400 AK120125.1 - DNA-binding protein 1e+0 At2g35640 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.04 1e+0 34 Populus trichocarpa PtpAffx.249.683.A1_at BP933394 - - 2e-32 At5g03240 UBQ3 (POLYUBIQUITIN 3) C.G. S.X.
0.33 2e-174 611 Triticum aestivum TaAffx.42391.1.S1_at AF091837.1 - - 7e-2 At2g17670 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.05 3e-1 34 Vitis vinifera 1618330_at CF210811 hypothetical protein LOC100252030 - 5e-9 At1g15480 DNA binding C.G. S.X.
0.19 6e-28 123 Zea mays Zm.6407.1.A1_at AY108032.1 DNA-binding protein - 2e+0 At3g44310 NIT1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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