Gene omics information

Query gene ID	Contig19949_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig19949_at	Contig19949	-	-	7e+0	At3g02620	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	S.X.	H.G.	Please select
0.50	66.9	Contig2343_s_at	Contig2343	-	-	1e+0	At5g26010	catalytic/ protein serine/threonine phosphatase	S.X.	H.G.	Please select
0.50	66.9	Contig8321_at	Contig8321	-	-	9e-3	At4g00026	-	S.X.	H.G.	Please select
0.40	53.1	Contig16867_at	Contig16867	-	-	7e-9	At3g02690	integral membrane family protein	S.X.	H.G.	Please select
0.30	37.0	Contig1512_at	Contig1512	-	-	0	At5g12250	TUB6 (BETA-6 TUBULIN)	S.X.	H.G.	Please select
0.13	11.6	Contig6751_at	Contig6751	-	-	1e+0	At3g04990	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.6	99.7	GSM261057	Xantha b-12 Cotrol rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
19.6	99.7	GSM261058	Xantha b-12 Cotrol rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
18.5	99.7	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
17.7	99.7	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
15.1	99.5	GSM261062	Xantha s-46 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.4	99.4	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.1	99.3	GSM261063	Xantha s-46 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.1	99.3	GSM261056	Xantha b-12 Cotrol rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.0	99.2	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.4	99.0	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-2	40	Contig11259_at	Contig11259	-	-	8e-4	At5g17230	phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase	C.G.	S.X.	Please select
0.02	1e-2	40	Contig17810_at	Contig17810	-	-	2e-3	At1g24625	ZFP7 (ZINC FINGER PROTEIN 7)	C.G.	S.X.	Please select
0.01	2e-1	36	Contig7126_at	Contig7126	-	-	3e-4	At2g25970	KH domain-containing protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig1307_at	Contig1307	-	-	5e-1	At1g10960	ATFD1 (FERREDOXIN 1)	C.G.	S.X.	Please select
0.02	9e-1	34	Contig16502_at	Contig16502	-	-	4e-1	At1g47970	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	34	Contig15113_at	Contig15113	-	-	2e+0	At3g60540	sec61beta family protein	C.G.	S.X.	Please select
0.01	9e-1	34	Contig4811_at	Contig4811	-	-	5e-3	At2g45750	dehydration-responsive family protein	C.G.	S.X.	Please select
0.02	9e-1	34	Contig4401_at	Contig4401	-	-	1e-19	At4g20150	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	34	Contig16402_at	Contig16402	-	-	2e+0	At2g06530	VPS2.1	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e+0	32	Arabidopsis thaliana	At3g02620	820737	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:unknown;PBOM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	36	Glycine max	Gma.8291.1.S1_at	CA784584	-	-	2e-9	At3g13700	RNA-binding protein, putative	C.G.	S.X.	Please select
0.02	2e-1	38	Oryza sativa	Os11g0187200	9639.m00790	-	-	2e-1	At2g23320	WRKY15	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.30585.1.A1_at	CV269337	-	-	3e-35	At3g55240	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.22	3e-14	79	Triticum aestivum	TaAffx.37583.2.S1_at	BJ267674	-	-	4e+0	At1g76860	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1620343_at	CB008362	-	-	9e-5	At5g24600	unknown protein	C.G.	S.X.	Please select
0.03	8e-1	34	Zea mays	Zm.6212.1.A1_at	AI677302	-	-	8e-1	At4g19270	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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