Gene omics information

Query gene ID	Contig19923_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig19923_at	Contig19923	-	-	3e-1	At4g26950	unknown protein	S.X.	H.G.	Please select
0.83	94.0	Contig13274_at	Contig13274	-	-	9e-3	At1g71690	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig20455_at	Contig20455	-	-	2e+0	At5g48220	indole-3-glycerol phosphate synthase, putative	S.X.	H.G.	Please select
0.61	78.7	HY03E10u_s_at	HY03E10u	-	-	1e+1	At5g63060	transporter	S.X.	H.G.	Please select
0.47	62.2	Contig1139_s_at	Contig1139	-	-	1e-19	At3g07110	60S ribosomal protein L13A (RPL13aA)	S.X.	H.G.	Please select
0.38	49.5	Contig1434_s_at	Contig1434	-	-	2e-1	At5g58580	ATL63 (ARABIDOPSIS TÓ	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.5	99.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
23.9	99.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
18.2	99.7	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
14.1	99.5	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
12.6	99.4	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
12.4	99.4	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
11.0	99.2	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.9	99.2	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.7	99.0	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
8.9	98.9	GSM68890	3 h control replicate 2	GSE3097	Barley1 salinity stress study

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-2	38	Contig9134_at	Contig9134	-	-	4e-22	At4g32600	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	4e-2	38	Contig12977_at	Contig12977	-	-	5e+0	At4g16750	DRE-binding transcription factor, putative	C.G.	S.X.	Please select
0.03	4e-2	38	Contig1166_s_at	Contig1166	-	-	7e-18	At1g07790	HTB1	C.G.	S.X.	Please select
0.05	1e-1	36	HM08L19r_at	HM08L19r	-	-	3e-2	At3g09980	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	36	M96941_at	M96941	-	-	2e+0	Atcg00770	-	C.G.	S.X.	Please select
0.05	1e-1	36	Contig24302_at	Contig24302	-	-	2e+0	At2g34120	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	36	Contig14509_at	Contig14509	-	-	6e-23	At4g13670	PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)	C.G.	S.X.	Please select
0.02	1e-1	36	Contig10477_at	Contig10477	-	-	7e-1	At5g13020	emsy N terminus domain-containing protein / ENT domain-containing protein	C.G.	S.X.	Please select
0.02	1e-1	36	Contig10080_at	Contig10080	-	-	8e-10	At2g01110	APG2 (ALBINO AND PALE GREEN 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At4g26950	828802	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-3	44	Glycine max	PsAffx.CL1801Contig1_s_at	PsAffx.CL1801Contig1	-	-	9e-2	At1g32690	unknown protein	C.G.	S.X.	Please select
0.16	7e-13	75	Oryza sativa	Os10g0577400	AK064295.1	-	Conserved hypothetical protein	2e-1	At1g22890	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e-1	36	Populus trichocarpa	PtpAffx.209814.1.S1_at	pmrna19354	hypothetical protein	-	2e-1	At5g59560	SRR1 (SENSITIVITY TO RED LIGHT REDUCED 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.42	2e-57	222	Triticum aestivum	Ta.6788.1.S1_at	BJ305466	-	-	8e-1	At5g63000	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1620911_at	CF371795	-	-	4e+0	At4g19150	ankyrin repeat family protein	C.G.	S.X.	Please select
0.21	2e-10	65	Zea mays	Zm.7060.1.A1_at	CO530085	-	-	4e-1	At3g10500	anac053 (Arabidopsis NAC domain containing protein 53)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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