CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig19894_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 87.1 Contig19894_at Contig19894 - - 9e-1 At2g35640 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.38 49.5 Contig3365_at Contig3365 - - 2e-85 At1g09100 RPT5B (26S proteasome AAA-ATPase subunit RPT5B) S.X. H.G.
0.27 32.1 Contig4283_at Contig4283 - - 9e-1 At2g40510 40S ribosomal protein S26 (RPS26A) S.X. H.G.
0.07 5.8 Contig11177_at Contig11177 - - 5e-1 At5g53730 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein S.X. H.G.
0.05 4.1 Contig6529_at Contig6529 - - 5e-8 At3g12050 Aha1 domain-containing protein S.X. H.G.
0.01 1.1 Contig4189_at Contig4189 - - 2e-15 At4g31300 PBA1 S.X. H.G.
0.00 0.2 Contig20093_at Contig20093 - - 3e-15 At3g15620 UVR3 (UV REPAIR DEFECTIVE 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.0 99.8 GSM382235 Root_Control1 GSE15295 Mercury toxicity in barley roots
20.3 99.7 GSM282021 Malting_day4_Legacy_rep 2 GSE11200 Expression data from malting barley seeds
15.6 99.6 GSM146365 Maythorpe Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
15.6 99.6 GSM146362 Golden Promise Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
14.6 99.5 GSM238436 Embryo 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
13.2 99.4 GSM146368 Maythorpe Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.1 99.1 GSM282039 Malting_day4_Morex_rep2 GSE11200 Expression data from malting barley seeds
10.0 99.1 GSM146358 Golden Promise Root Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.6 99.0 GSM238438 Embryo 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
9.1 98.9 GSM431571 pathogen isolates: Polymyxa betae - rep1 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 4e-4 44 Contig19644_at Contig19644 - - 1e+0 At1g79790 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.03 4e-4 44 Contig9102_at Contig9102 - - 3e-27 At2g22230 beta-hydroxyacyl-ACP dehydratase, putative C.G. S.X.
0.03 2e-3 42 Contig11570_at Contig11570 - - 1e-1 At3g13200 EMB2769 (EMBRYO DEFECTIVE 2769) C.G. S.X.
0.03 7e-3 40 Contig2822_s_at Contig2822 - - 6e-3 At3g18410 NADH-ubiquinone oxidoreductase-related C.G. S.X.
0.02 7e-3 40 Contig5841_at Contig5841 - - 4e-6 At3g23250 MYB15 (MYB DOMAIN PROTEIN 15) C.G. S.X.
0.02 3e-2 38 Contig5728_at Contig5728 - - 1e-15 At3g06483 PDK (PYRUVATE DEHYDROGENASE KINASE) C.G. S.X.
0.02 3e-2 38 Contig18571_at Contig18571 - - 8e-8 At4g36870 BLH2 (BEL1-LIKE HOMEODOMAIN 2) C.G. S.X.
0.02 3e-2 38 Contig8405_at Contig8405 - - 7e-20 At3g58140 phenylalanyl-tRNA synthetase class IIc family protein C.G. S.X.
0.02 3e-2 38 Contig7813_at Contig7813 - - 3e-12 At4g00850 GIF3 (GRF1-INTERACTING FACTOR 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-1 34 Arabidopsis thaliana At2g35640 818133 hydroxyproline-rich glycoprotein family protein F:transcription factor activity;P:regulation of transcription;C:unknown;PMFOBV - - - C.G. S.X.
0.06 3e-1 36 Glycine max GmaAffx.48199.3.S1_at CA939042 - - 8e-4 At3g61550 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.09 1e-47 190 Oryza sativa Os02g0111800 AK111191.1 - Protein kinase domain containing protein 7e-3 At1g08590 CLAVATA1 receptor kinase (CLV1) C.G. S.X.
0.04 3e-1 36 Populus trichocarpa PtpAffx.217498.1.S1_at pmrna32785 - - 3e-1 At3g23290 - C.G. S.X.
0.19 7e-14 77 Triticum aestivum Ta.19023.1.S1_at CA609435 - - 4e+0 At1g65490 unknown protein C.G. S.X.
0.04 3e-1 34 Vitis vinifera 1622880_at CF404749 - - 2e-1 At3g15020 malate dehydrogenase (NAD), mitochondrial, putative C.G. S.X.
0.04 3e-5 48 Zea mays Zm.1926.1.A1_at CO521075 hypothetical protein LOC100192826 - 8e-9 At1g24440 protein binding / zinc ion binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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