CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig197_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.85 94.5 Contig197_at Contig197 - - 1e-24 At5g59690 histone H4 S.X. H.G.
0.44 58.9 EBem04_SQ004_M07_s_at EBem04_SQ004_M07 - - 8e-2 At3g10850 GLY2 S.X. H.G.
0.42 55.2 Contig5553_at Contig5553 - - 2e+0 At4g15955 epoxide hydrolase-related S.X. H.G.
0.41 53.9 Contig16766_at Contig16766 - - 1e+0 At1g73530 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.41 53.9 Contig8884_at Contig8884 - - 3e-3 At4g20410 GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN) S.X. H.G.
0.40 53.1 Contig7318_at Contig7318 - - 9e-32 At4g34900 XDH2 (XXANTHINE DEHYDROGENASE 2) S.X. H.G.
0.34 43.6 Contig5191_at Contig5191 - - 1e-11 At4g35310 CPK5 (calmodulin-domain protein kinase 5) S.X. H.G.
0.32 40.3 Contig9681_at Contig9681 - - 3e-1 At1g62200 proton-dependent oligopeptide transport (POT) family protein S.X. H.G.
0.32 40.3 Contig14639_at Contig14639 - - 8e+0 At5g47175 LCR3 (Low-molecular-weight cysteine-rich 3) S.X. H.G.
0.31 38.6 Contig12039_at Contig12039 beclin 1 protein - 5e-1 At3g06820 mov34 family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.3 99.5 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
13.6 99.5 GSM146376 Maythorpe shoot Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
11.8 99.3 GSM146371 Golden Promise shoot Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.2 99.1 GSM146375 Maythorpe shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.1 99.1 GSM146379 Maythorpe shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.1 99.1 GSM146377 Maythorpe shoot Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.1 99.1 GSM146369 Golden Promise shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.9 99.1 GSM146370 Golden Promise shoot Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.8 99.1 GSM282029 Malting_day1_Merit_rep3 GSE11200 Expression data from malting barley seeds
9.3 99.0 GSM282027 Malting_day1_Legacy_rep2 GSE11200 Expression data from malting barley seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.96 0 1051 Contig197_s_at Contig197 - - 1e-24 At5g59690 histone H4 C.G. S.X.
0.85 0 730 HVSMEg0017O19r2_at HVSMEg0017O19r2 - - 1e-12 At1g07820 histone H4 C.G. S.X.
0.55 6e-158 555 Contig172_s_at Contig172 - - 2e-24 At5g59690 histone H4 C.G. S.X.
0.57 2e-157 553 Contig9_x_at Contig9 - - 3e-22 At5g59690 histone H4 C.G. S.X.
0.57 2e-157 553 Contig9_at Contig9 - - 3e-22 At5g59690 histone H4 C.G. S.X.
0.57 6e-155 545 Contig250_at Contig250 - - 6e-27 At5g59690 histone H4 C.G. S.X.
0.53 2e-154 543 bags4n02_at bags4n02 - - 4e-22 At5g59690 histone H4 C.G. S.X.
0.47 5e-149 525 Contig316_s_at Contig316 - - 2e-24 At5g59970 histone H4 C.G. S.X.
0.51 5e-146 515 Contig500_at Contig500 - - 4e-19 At5g59690 histone H4 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.46 1e-24 113 Arabidopsis thaliana At5g59690 836090 histone H4 F:DNA binding;P:nucleosome assembly;C:thylakoid;MOPFV - - - C.G. S.X.
0.58 3e-100 365 Glycine max PsAffx.C1000260_s_at PsAffx.C1000260 - - 9e-10 At5g59690 histone H4 C.G. S.X.
0.58 7e-133 474 Oryza sativa Os09g0433600 AK058686.1 - Histone H4 2e-20 At1g07660 histone H4 C.G. S.X.
0.41 7e-9 61 Populus trichocarpa PtpAffx.4633.2.S1_at CA823688 - - 9e-47 At1g07820 histone H4 C.G. S.X.
0.56 1e-157 555 Triticum aestivum TaAffx.132315.2.S1_x_at BE493709 - - 3e-22 At5g59690 histone H4 C.G. S.X.
0.45 4e-19 93 Vitis vinifera 1613076_at CB970842 - - 2e-42 At5g59690 histone H4 C.G. S.X.
0.51 9e-126 448 Zea mays Zm.6721.12.A1_s_at BG265991 Histone H4 - 6e-18 At1g07660 histone H4 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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