Gene omics information

Query gene ID	Contig19683_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig19683_at	Contig19683	-	-	1e+0	At3g24820	BSD domain-containing protein	S.X.	H.G.	Please select
0.73	88.7	Contig19665_at	Contig19665	-	-	3e-1	At3g16820	F-box family protein	S.X.	H.G.	Please select
0.67	84.7	HU09E15u_at	HU09E15u	-	-	1e+1	At4g37090	unknown protein	S.X.	H.G.	Please select
0.67	84.7	HU09E15u_x_at	HU09E15u	-	-	1e+1	At4g37090	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig20962_at	Contig20962	-	-	9e-9	At2g33820	MBAC1	S.X.	H.G.	Please select
0.36	47.1	Contig26498_at	Contig26498	-	-	2e-2	At4g00960	protein kinase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.7	99.7	GSM372939	genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.6	99.5	GSM363465	5 mM B(OH)3 treatment (5B) - rep3	GSE14521	Late response to boron toxicity in barley leaves
12.5	99.4	GSM372963	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.9	99.2	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
8.6	98.8	GSM363467	10 mM B(OH)3 treatment (10B) - rep2	GSE14521	Late response to boron toxicity in barley leaves
8.2	98.7	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.0	98.7	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
7.1	98.4	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.9	98.3	GSM372999	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.0	97.9	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	34	Contig425_at	Contig425	-	-	1e-20	At2g34420	LHB1B2	C.G.	S.X.	Please select
0.02	5e-1	34	Contig828_s_at	Contig828	-	-	1e-26	At2g34430	LHB1B1	C.G.	S.X.	Please select
0.02	2e+0	32	Contig4122_s_at	Contig4122	-	-	2e-34	At4g24830	arginosuccinate synthase family	C.G.	S.X.	Please select
0.02	2e+0	32	Contig2405_at	Contig2405	-	-	2e+0	At5g57980	RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig5712_at	Contig5712	-	-	2e+0	At5g55260	PPX2 (PROTEIN PHOSPHATASE X 2)	C.G.	S.X.	Please select
0.01	2e+0	32	Contig4121_at	Contig4121	-	-	2e-45	At4g24830	arginosuccinate synthase family	C.G.	S.X.	Please select
0.03	2e+0	32	rbaal35m01_s_at	rbaal35m01	-	-	2e-8	At3g09550	protein binding	C.G.	S.X.	Please select
0.03	2e+0	32	HU05N01u_at	HU05N01u	-	-	1e+0	At5g19830	aminoacyl-tRNA hydrolase	C.G.	S.X.	Please select
0.02	2e+0	32	Contig22928_at	Contig22928	-	-	5e-1	At5g09960	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At3g24820	822080	BSD domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	Gma.9130.1.A1_at	BI969027	-	-	3e+0	At1g61250	SC3 (SECRETORY CARRIER 3)	C.G.	S.X.	Please select
0.13	1e-20	101	Oryza sativa	Os04g0619400	AK066337.1	-	Protein kinase domain containing protein	9e-7	At1g16670	protein kinase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.50116.1.A1_at	CV258312	-	-	4e+0	At4g25100	FSD1 (FE SUPEROXIDE DISMUTASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.65	1e-111	402	Triticum aestivum	Ta.299.2.A1_at	CA661845	-	-	4e+0	At5g46230	unknown protein	C.G.	S.X.	Please select
0.05	1e+0	32	Vitis vinifera	1622710_at	CK138248.1	-	-	3e+0	At5g08505	-	C.G.	S.X.	Please select
0.15	1e-7	56	Zea mays	Zm.9768.1.A1_at	BM338514	hypothetical protein LOC100273687	-	3e-2	At1g29730	ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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