CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig19680_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 94.0 Contig19680_at Contig19680 - - 9e-1 At2g04450 ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6) S.X. H.G.
0.29 35.5 HW05D15u_at HW05D15u - - 1e+0 At2g36740 SWC2 S.X. H.G.
0.07 5.8 Contig13406_at Contig13406 - - 1e-1 At1g15220 CCMH S.X. H.G.
0.06 4.8 Contig16107_at Contig16107 - - 2e+0 At3g09980 unknown protein S.X. H.G.
0.05 4.1 U08169_at U08169 - - 9e+0 At4g30070 LCR59 (Low-molecular-weight cysteine-rich 59) S.X. H.G.
0.02 1.8 HA10K08u_x_at HA10K08u - - 4e+0 At1g15830 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
66.2 100.0 GSM130803 JA, biological rep1 GSE5605 Expression data from barley under salinity stress and JA treatment
27.7 99.8 GSM130804 JA, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
15.6 99.6 GSM146375 Maythorpe shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
13.8 99.5 GSM68903 27 h control replicate3 GSE3097 Barley1 salinity stress study
12.9 99.4 GSM68891 3 h control replicate 3 GSE3097 Barley1 salinity stress study
12.0 99.3 GSM68902 27 h control replicate 2 GSE3097 Barley1 salinity stress study
11.6 99.3 GSM146376 Maythorpe shoot Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.9 99.2 GSM146370 Golden Promise shoot Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.8 99.1 GSM68890 3 h control replicate 2 GSE3097 Barley1 salinity stress study
9.0 98.9 GSM146379 Maythorpe shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 6e-65 246 Contig3946_at Contig3946 - - 6e-1 At5g16960 NADP-dependent oxidoreductase, putative C.G. S.X.
0.42 8e-46 182 HY10H16u_x_at HY10H16u - - 3e+0 At5g44500 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative C.G. S.X.
0.11 1e-4 46 HVSMEi0017B05r2_x_at HVSMEi0017B05r2 - - 1e+0 At5g43000 unknown protein C.G. S.X.
0.07 3e-2 38 Contig5940_s_at Contig5940 - - 9e-12 At1g65560 allyl alcohol dehydrogenase, putative C.G. S.X.
0.07 3e-2 38 Contig5940_at Contig5940 - - 9e-12 At1g65560 allyl alcohol dehydrogenase, putative C.G. S.X.
0.05 3e-2 38 Contig5939_at Contig5939 - - 1e-5 At3g03080 NADP-dependent oxidoreductase, putative C.G. S.X.
0.01 1e-1 36 Contig3822_at Contig3822 - - 6e-43 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) C.G. S.X.
0.02 4e-1 34 Contig10160_at Contig10160 - - 2e-10 At3g55070 - C.G. S.X.
0.02 2e+0 32 Contig9352_at Contig9352 - - 5e-2 At5g05230 ubiquitin-protein ligase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e-1 34 Arabidopsis thaliana At2g04450 814985 ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6) F:ADP-ribose diphosphatase activity, hydrolase activity, NAD or NADH binding;P:response to other organism;C:cytosol;OBMPAFV - - - C.G. S.X.
0.04 8e-2 38 Glycine max HgAffx.7551.1.A1_at CK350070 - - 2e+1 At3g13437 unknown protein C.G. S.X.
0.18 5e-7 56 Oryza sativa Os04g0497000 AK109382.2 - (+)-pulegone reductase 5e-5 At3g03080 NADP-dependent oxidoreductase, putative C.G. S.X.
0.04 5e+0 32 Populus trichocarpa PtpAffx.50667.1.A1_at CV237201 - - 1e+1 At5g62200 embryo-specific protein-related C.G. S.X.
0.39 3e-56 218 Triticum aestivum TaAffx.98909.1.A1_at CK211361 - - 2e+0 At5g16960 NADP-dependent oxidoreductase, putative C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1618291_at CF405641 hypothetical protein LOC100255871 - 4e+0 At5g26673 - C.G. S.X.
0.18 9e-36 149 Zea mays Zm.3560.1.S1_at AI987350 NADP-dependent oxidoreductase P1 - 3e+0 At2g40170 GEA6 (LATE EMBRYOGENESIS ABUNDANT 6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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