Gene omics information

Query gene ID	Contig19672_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig19672_at	Contig19672	-	-	5e-7	At3g09980	unknown protein	S.X.	H.G.	Please select
0.50	66.9	HS09L05u_at	HS09L05u	-	-	4e+0	At5g45350	proline-rich family protein	S.X.	H.G.	Please select
0.17	16.9	Contig2433_s_at	Contig2433	-	-	9e-9	At4g29260	acid phosphatase class B family protein	S.X.	H.G.	Please select
0.10	8.4	HS05E20u_x_at	HS05E20u	-	-	6e+0	At5g48700	ubiquitin-related	S.X.	H.G.	Please select
0.07	5.8	Contig9680_at	Contig9680	-	-	6e-2	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	S.X.	H.G.	Please select
0.04	3.4	HVSMEb0001J09r2_x_at	HVSMEb0001J09r2	-	-	7e+0	At5g45710	RHA1 (ROOT HANDEDNESS 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.5	99.3	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
11.5	99.3	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
9.5	99.0	GSM261027	ABA-Late-rep1	GSE10328	ABA experiment
8.5	98.8	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
8.2	98.7	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
7.8	98.6	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
6.4	98.1	GSM261034	Dicktoo-chilling-rep2	GSE10329	Low temperature stress in cv. Dicktoo
6.4	98.1	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.4	98.1	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.3	98.1	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-3	42	Contig2402_s_at	Contig2402	-	-	2e-13	At4g39090	RD19 (RESPONSIVE TO DEHYDRATION 19)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig12383_at	Contig12383	-	-	6e-1	At5g10870	ATCM2 (chorismate mutase 2)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig21007_at	Contig21007	-	-	1e+0	At2g27520	F-box family protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig11783_at	Contig11783	-	-	6e-36	At3g01300	protein kinase, putative	C.G.	S.X.	Please select
0.02	2e-1	36	Contig7110_at	Contig7110	-	-	4e-1	At2g45860	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig7002_at	Contig7002	-	-	7e-3	At5g23535	KOW domain-containing protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig1023_at	Contig1023	-	-	3e-6	At1g48630	RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B)	C.G.	S.X.	Please select
0.02	9e-1	34	Contig15764_at	Contig15764	-	-	9e-2	At4g16140	proline-rich family protein	C.G.	S.X.	Please select
0.02	9e-1	34	Contig7666_s_at	Contig7666	-	-	3e-3	At5g67400	peroxidase 73 (PER73) (P73) (PRXR11)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	5e-7	56	Arabidopsis thaliana	At3g09980	820159	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	6e-4	46	Glycine max	Gma.2004.1.S1_at	CD391312	-	-	5e-35	At3g09980	unknown protein	C.G.	S.X.	Please select
0.34	2e-41	171	Oryza sativa	Os02g0528100	AK103078.1	-	Protein of unknown function DUF662 family protein	4e-3	At1g33890	avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	2e-4	48	Populus trichocarpa	PtpAffx.209551.1.S1_at	pmrna18918	hypothetical protein	-	2e-11	At3g52900	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.70	0	989	Triticum aestivum	Ta.8111.1.S1_a_at	BQ161325	-	-	5e-7	At3g09980	unknown protein	C.G.	S.X.	Please select
0.05	9e-9	59	Vitis vinifera	1620687_at	CF516986	hypothetical protein LOC100256294	-	1e-7	At5g03660	unknown protein	C.G.	S.X.	Please select
0.46	5e-113	406	Zea mays	Zm.15057.1.S1_at	BM337751	hypothetical protein LOC100277048	-	2e+0	At5g03660	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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