Gene omics information

Query gene ID	Contig19576_x_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	78.7	Contig19576_x_at	Contig19576	-	-	5e-1	At2g29910	F-box family protein	S.X.	H.G.	Please select
0.55	72.0	HW05K01u_at	HW05K01u	-	-	9e-1	At3g15150	zinc ion binding	S.X.	H.G.	Please select
0.50	66.9	Contig25477_at	Contig25477	-	-	6e+0	At5g33421	unknown protein	S.X.	H.G.	Please select
0.42	55.2	Contig9642_at	Contig9642	-	-	1e-13	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	S.X.	H.G.	Please select
0.38	49.5	Contig1188_s_at	Contig1188	amylase/protease inhibitor	-	6e+0	At5g05120	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.36	47.1	Contig16630_at	Contig16630	-	-	1e+0	At1g31250	proline-rich family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.0	98.4	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.9	97.1	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.0	96.0	GSM261027	ABA-Late-rep1	GSE10328	ABA experiment
3.9	95.8	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
3.9	95.8	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.8	95.7	GSM160744	drought control rep2	GSE6990	Barley drought stress
3.8	95.7	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8	95.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.6	95.3	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.6	95.3	GSM160815	drought control rep3	GSE6990	Barley drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	7e-153	537	Contig19576_at	Contig19576	-	-	5e-1	At2g29910	F-box family protein	C.G.	S.X.	Please select
0.03	1e-3	42	Contig7429_s_at	Contig7429	-	-	5e-8	At2g18162	CPuORF1 (Conserved peptide upstream open reading frame 1)	C.G.	S.X.	Please select
0.03	1e-3	42	Contig13036_at	Contig13036	-	-	6e-1	At3g57000	nucleolar essential protein-related	C.G.	S.X.	Please select
0.04	4e-3	40	Contig10409_s_at	Contig10409	-	-	2e+0	At1g54200	unknown protein	C.G.	S.X.	Please select
0.04	4e-3	40	Contig10409_at	Contig10409	-	-	2e+0	At1g54200	unknown protein	C.G.	S.X.	Please select
0.06	2e-2	38	Contig23558_at	Contig23558	-	-	7e-1	At3g15270	SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5)	C.G.	S.X.	Please select
0.02	2e-2	38	Contig12178_at	Contig12178	-	-	3e-3	At3g06490	MYB108 (myb domain protein 108)	C.G.	S.X.	Please select
0.03	6e-2	36	Contig3414_s_at	Contig3414	-	-	1e+0	At4g32900	aminoacyl-tRNA hydrolase	C.G.	S.X.	Please select
0.02	6e-2	36	Contig9078_at	Contig9078	-	-	2e-5	At1g12430	ARK3 (ARMADILLO REPEAT KINESIN 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	34	Arabidopsis thaliana	At2g29910	817541	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	4e-2	38	Glycine max	HgAffx.22404.1.S1_at	CA940180	-	-	9e-1	At5g42895	-	C.G.	S.X.	Please select
0.06	2e-2	40	Oryza sativa	OsAffx.472.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	7e-1	34	Populus trichocarpa	PtpAffx.222925.1.S1_at	pmrna40653	hypothetical protein	-	1e+1	At4g33710	pathogenesis-related protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.35	3e-33	141	Triticum aestivum	TaAffx.131803.1.S1_at	CA732492	-	-	1e+0	At2g23320	WRKY15	C.G.	S.X.	Please select
0.06	2e-1	34	Vitis vinifera	1622607_at	AF271662.1	hypothetical protein LOC100250080	-	1e-8	At2g36830	GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN)	C.G.	S.X.	Please select
0.05	2e-1	34	Zea mays	ZmAffx.826.1.A1_at	AI770514	-	-	1e-5	At3g13440	methyltransferase/ nucleic acid binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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