Gene omics information

Query gene ID	Contig19475_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	75.8	Contig19475_at	Contig19475	-	-	2e-9	At2g42320	nucleolar protein gar2-related	S.X.	H.G.	Please select
0.61	78.7	Contig4487_s_at	Contig4487	-	-	4e-1	At5g16470	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.44	58.9	Contig4489_s_at	Contig4489	-	-	3e+0	At2g29525	-	S.X.	H.G.	Please select
0.11	9.4	Contig704_at	Contig704	-	-	1e-1	At1g15140	oxidoreductase NAD-binding domain-containing protein	S.X.	H.G.	Please select
0.08	6.5	Contig3187_s_at	Contig3187	-	-	1e+0	At1g31410	putrescine-binding periplasmic protein-related	S.X.	H.G.	Please select
0.04	3.4	Contig7012_at	Contig7012	-	-	6e+0	At1g57730	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.3	99.7	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
17.6	99.6	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
11.6	99.3	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
10.6	99.2	GSM261028	ABA-Late-rep2	GSE10328	ABA experiment
10.5	99.2	GSM261027	ABA-Late-rep1	GSE10328	ABA experiment
9.6	99.0	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.3	99.0	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment
8.6	98.8	GSM160464	drought control rep1	GSE6990	Barley drought stress
7.4	98.5	GSM68903	27 h control replicate3	GSE3097	Barley1 salinity stress study
7.3	98.5	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	3e-40	165	Contig16468_at	Contig16468	-	-	8e-6	At2g42320	nucleolar protein gar2-related	C.G.	S.X.	Please select
0.02	2e-1	36	Contig2445_at	Contig2445	-	-	9e+0	At1g33925	unknown protein	C.G.	S.X.	Please select
0.01	8e-1	34	Contig1623_at	Contig1623	-	-	8e-121	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	C.G.	S.X.	Please select
0.03	8e-1	34	HVSMEb0008G01r2_at	HVSMEb0008G01r2	-	-	5e-1	At4g18170	WRKY28	C.G.	S.X.	Please select
0.02	8e-1	34	HVSMEm0018N06r2_at	HVSMEm0018N06r2	-	-	4e+0	At5g50000	protein kinase, putative	C.G.	S.X.	Please select
0.02	8e-1	34	Contig16530_at	Contig16530	-	-	1e+0	At4g26470	calcium ion binding	C.G.	S.X.	Please select
0.01	3e+0	32	Contig7235_at	Contig7235	-	-	6e-8	At4g02940	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Contig6784_at	Contig6784	-	-	4e-22	At2g26460	RED family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig6073_at	Contig6073	-	-	6e-1	At5g17450	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-9	63	Arabidopsis thaliana	At2g42320	818833	nucleolar protein gar2-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e-7	56	Glycine max	Gma.2048.1.S1_at	BQ273518	-	-	1e-7	At2g42320	nucleolar protein gar2-related	C.G.	S.X.	Please select
0.19	3e-77	289	Oryza sativa	Os09g0487200	AK070460.1	-	Conserved hypothetical protein	3e-8	At2g42320	nucleolar protein gar2-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	2e-7	57	Populus trichocarpa	PtpAffx.16901.1.S1_at	CX660057	hypothetical protein	-	1e-11	At3g57780	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e-1	36	Triticum aestivum	Ta.29571.1.A1_at	AL830357	-	-	5e-1	At1g43624	unknown protein	C.G.	S.X.	Please select
0.07	3e-8	57	Vitis vinifera	1606524_at	CB979170	hypothetical protein LOC100266440	-	2e-19	At3g01810	-	C.G.	S.X.	Please select
0.16	4e-21	101	Zea mays	Zm.2972.1.A1_at	BM073882	-	-	4e-3	At3g01810	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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