Gene omics information

Query gene ID	Contig19393_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.84	94.3	Contig19393_at	Contig19393	-	-	3e-10	At3g53420	PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A)	S.X.	H.G.	Please select
0.77	90.8	HV12H12u_at	HV12H12u	-	-	2e-45	At4g05050	UBQ11 (UBIQUITIN 11)	S.X.	H.G.	Please select
0.65	81.4	Contig2112_at	Contig2112	-	-	1e-8	At1g44970	peroxidase, putative	S.X.	H.G.	Please select
0.65	81.4	Contig3565_s_at	Contig3565	-	-	2e-1	At4g01430	nodulin MtN21 family protein	S.X.	H.G.	Please select
0.65	81.4	Contig20065_at	Contig20065	-	-	4e-1	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	S.X.	H.G.	Please select
0.63	80.3	HO11K23S_s_at	HO11K23S	-	-	4e+0	At3g17420	GPK1	S.X.	H.G.	Please select
0.62	79.1	Contig6960_at	Contig6960	-	-	1e+0	At4g29770	-	S.X.	H.G.	Please select
0.61	78.7	HVSMEb0005F19r2_at	HVSMEb0005F19r2	-	-	3e-1	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	S.X.	H.G.	Please select
0.60	77.3	Mla12DH_orf_3pri12_at	Mla12DH_orf_3pri12	-	-	6e-1	At4g23620	50S ribosomal protein-related	S.X.	H.G.	Please select
0.57	74.9	HV10P15u_at	HV10P15u	-	-	3e+0	At2g28725	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.7	99.6	GSM372940	genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
14.5	99.5	GSM372956	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
14.5	99.5	GSM372992	genotype: 11542 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.4	99.4	GSM372976	genotype: 11542 - pathogen isolates: 5874 - time: 0 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.6	99.3	GSM68898	8 h salt stressed replicate 1	GSE3097	Barley1 salinity stress study
11.4	99.3	GSM68895	8 h control replicate 1	GSE3097	Barley1 salinity stress study
11.4	99.3	GSM372958	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.4	99.3	GSM68899	8 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
11.2	99.2	GSM68900	8 h salt stressed replicate 3	GSE3097	Barley1 salinity stress study
10.7	99.2	GSM68897	8 h control replicate 3	GSE3097	Barley1 salinity stress study

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	3e-64	244	Contig1216_s_at	Contig1216	-	-	3e-12	At2g37180	RD28 (RESPONSIVE TO DESICCATION 28)	C.G.	S.X.	Please select
0.22	2e-56	218	Contig1222_s_at	Contig1222	-	-	6e-29	At2g37170	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)	C.G.	S.X.	Please select
0.18	7e-50	196	Contig1226_at	Contig1226	-	-	2e-26	At1g01620	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)	C.G.	S.X.	Please select
0.25	7e-50	196	Contig1219_s_at	Contig1219	aquaporin	-	3e-24	At1g01620	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)	C.G.	S.X.	Please select
0.23	1e-48	192	Contig1223_at	Contig1223	aquaporin	-	6e-38	At2g37170	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)	C.G.	S.X.	Please select
0.16	9e-37	153	Contig1237_s_at	Contig1237	aquaporin	-	1e-30	At1g01620	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)	C.G.	S.X.	Please select
0.28	9e-37	153	Contig1225_s_at	Contig1225	aquaporin	-	5e-31	At1g01620	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)	C.G.	S.X.	Please select
0.15	9e-37	153	Contig1242_at	Contig1242	aquaporin	-	1e-30	At1g01620	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)	C.G.	S.X.	Please select
0.16	9e-37	153	Contig1240_at	Contig1240	-	-	8e-9	At1g01620	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	3e-10	65	Arabidopsis thaliana	At3g53420	824510	PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A)	a member of the plasma membrane intrinsic protein subfamily PIP2. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed specifically in the vascular bundles and protein level increases slightly during leaf dev	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	1e-7	57	Glycine max	Gma.5998.1.A1_at	BI968591	-	-	1e-48	At4g35100	PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3)	C.G.	S.X.	Please select
0.38	2e-59	230	Oryza sativa	Os07g0448400	AK107700.1	-	Plasma membrane integral protein ZmPIP2-6	1e-25	At3g53420	PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	7e-6	52	Populus trichocarpa	PtpAffx.7681.5.A1_at	CV279861	-	-	3e-35	At1g01620	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.69	0	654	Triticum aestivum	TaAffx.8804.2.S1_at	BE217049	-	-	3e-13	At2g37170	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)	C.G.	S.X.	Please select
0.19	7e-18	89	Vitis vinifera	1613240_s_at	CF213482	aquaporin-like	-	7e-64	At1g01620	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)	C.G.	S.X.	Please select
0.25	2e-37	155	Zea mays	Zm.13608.1.S1_at	AY107589.1	-	-	2e-5	At3g53420	PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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