Gene omics information

Query gene ID	Contig19387_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig19387_at	Contig19387	-	-	2e-1	At3g30580	unknown protein	S.X.	H.G.	Please select
0.71	87.1	Contig11081_at	Contig11081	-	-	1e-26	At5g47640	NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)	S.X.	H.G.	Please select
0.67	84.7	Contig25214_at	Contig25214	-	-	1e+0	At3g26935	zinc finger (DHHC type) family protein	S.X.	H.G.	Please select
0.60	77.3	HA12A08u_s_at	HA12A08u	-	-	5e-2	At1g22780	PFL (POINTED FIRST LEAVES)	S.X.	H.G.	Please select
0.50	66.9	Contig10380_x_at	Contig10380	-	-	4e-1	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	S.X.	H.G.	Please select
0.44	58.9	Contig19492_at	Contig19492	-	-	5e-1	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.6	99.9	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
29.4	99.9	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
26.9	99.8	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
19.7	99.7	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
19.5	99.7	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
19.5	99.7	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
17.1	99.6	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
17.0	99.6	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
12.9	99.4	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
12.8	99.4	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.62	6e-108	389	HS05J08u_s_at	HS05J08u	-	-	2e+0	At5g57887	unknown protein	C.G.	S.X.	Please select
0.04	3e-2	38	Contig24371_at	Contig24371	-	-	2e+1	At5g28781	unknown protein	C.G.	S.X.	Please select
0.04	4e-1	34	Contig12749_at	Contig12749	-	-	9e-1	At1g23590	unknown protein	C.G.	S.X.	Please select
0.04	4e-1	34	Contig3735_at	Contig3735	-	-	2e-1	At2g02100	LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69)	C.G.	S.X.	Please select
0.03	4e-1	34	Contig14646_s_at	Contig14646	-	-	1e+0	At3g15080	exonuclease family protein	C.G.	S.X.	Please select
0.03	4e-1	34	Contig14645_at	Contig14645	-	-	2e+0	At3g15080	exonuclease family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig7230_at	Contig7230	-	-	8e-16	At1g63940	monodehydroascorbate reductase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Contig17941_at	Contig17941	-	-	8e+0	At5g54855	pollen Ole e 1 allergen and extensin family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig13117_at	Contig13117	-	-	6e-1	At5g14740	CA2 (CARBONIC ANHYDRASE 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-1	36	Arabidopsis thaliana	At3g30580	822772	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	Gma.6184.1.S1_at	BQ611944	-	-	3e+0	Atcg00800	-	C.G.	S.X.	Please select
0.06	3e-2	40	Oryza sativa	Os04g0653600	AK059064.1	-	AP2/EREBP transcription factor BABY BOOM1	3e+0	At2g21330	fructose-bisphosphate aldolase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+0	34	Populus trichocarpa	PtpAffx.160011.1.A1_at	CV251111	hypothetical protein	-	2e+0	At3g05460	sporozoite surface protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	9e-1	34	Triticum aestivum	TaAffx.85165.1.S1_at	CA625099	-	-	1e+0	At3g10060	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	C.G.	S.X.	Please select
0.06	1e+0	32	Vitis vinifera	1618346_at	CD801523	-	-	2e-2	At5g03740	HD2C (HISTONE DEACETYLASE 2C)	C.G.	S.X.	Please select
0.04	1e+0	32	Zea mays	ZmAffx.203.1.A1_at	AI670154	-	-	6e-23	At2g20140	26S protease regulatory complex subunit 4, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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