Gene omics information

Query gene ID	Contig19357_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.97	99.6	Contig19357_at	Contig19357	-	-	2e+0	At3g14840	leucine-rich repeat family protein / protein kinase family protein	S.X.	H.G.	Please select
0.58	74.9	HV_CEb0008L21r2_at	HV_CEb0008L21r2	-	-	2e+1	At5g35320	unknown protein	S.X.	H.G.	Please select
0.53	69.7	HVSMEm0004M03r2_at	HVSMEm0004M03r2	-	-	8e+0	At4g29035	-	S.X.	H.G.	Please select
0.53	69.7	HVSMEl0014P01r2_at	HVSMEl0014P01r2	-	-	3e+0	At5g38910	germin-like protein, putative	S.X.	H.G.	Please select
0.51	67.5	Contig619_at	Contig619	-	-	8e-10	At4g34050	caffeoyl-CoA 3-O-methyltransferase, putative	S.X.	H.G.	Please select
0.47	62.2	Contig6557_s_at	Contig6557	-	-	2e+0	At1g15370	-	S.X.	H.G.	Please select
0.47	62.2	EBro03_SQ007_C24_at	EBro03_SQ007_C24	-	-	1e+0	At4g15885	kinesin motor protein-related	S.X.	H.G.	Please select
0.46	61.0	Contig11142_at	Contig11142	-	-	7e-4	At1g08370	DCP1 (decapping 1)	S.X.	H.G.	Please select
0.45	59.3	HW09B04u_at	HW09B04u	-	-	2e-1	At5g46360	KCO3 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3)	S.X.	H.G.	Please select
0.45	59.3	Contig14005_at	Contig14005	-	-	2e-16	At2g48070	RPH1 (RESISTANCE TO PHYTOPHTHORA 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.7	99.5	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
12.0	99.3	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
11.7	99.3	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
9.8	99.1	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo
9.7	99.0	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
9.2	99.0	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.5	98.6	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment
7.4	98.5	GSM161220	cold treatment rep2	GSE6993	Barley low temperature stress
6.9	98.3	GSM160464	drought control rep1	GSE6990	Barley drought stress
6.5	98.2	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	2e-41	169	HW04N20u_at	HW04N20u	-	-	2e-1	At3g58230	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Contig13789_at	Contig13789	-	-	1e+0	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig4418_at	Contig4418	-	-	3e+0	At5g26100	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	34	Contig21290_at	Contig21290	-	-	2e+0	At5g01910	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig4552_at	Contig4552	-	-	2e+0	At5g18040	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Contig6972_at	Contig6972	-	-	5e-26	At5g62740	band 7 family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig12452_at	Contig12452	-	-	1e-1	At3g28956	catalytic/ nucleotide binding	C.G.	S.X.	Please select
0.02	3e+0	32	Contig3513_at	Contig3513	-	-	4e-1	At4g02590	UNE12 (unfertilized embryo sac 12)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig12452_s_at	Contig12452	-	-	1e-1	At3g28956	catalytic/ nucleotide binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At3g14840	820713	leucine-rich repeat family protein / protein kinase family protein	F:protein binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	HgAffx.14297.1.S1_at	CB299843	-	-	3e+0	At3g50090	exonuclease family protein	C.G.	S.X.	Please select
0.11	1e-52	208	Oryza sativa	Os01g0864700	AU172991	-	Protein kinase domain containing protein	3e-51	At3g44200	NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6")	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e-1	36	Populus trichocarpa	Ptp.1120.1.S1_at	CK090290	-	-	3e+0	At5g23600	tRNA 2'phosphotransferase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.27	2e-37	157	Triticum aestivum	TaAffx.86665.2.S1_at	CA602753	-	-	9e-1	At3g25727	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1606609_at	CF415334	hypothetical protein LOC100262065	-	3e-7	At1g30550	-	C.G.	S.X.	Please select
0.20	1e-30	133	Zea mays	Zm.6845.1.A1_at	BG841671	-	-	7e-1	At5g63150	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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