Gene omics information

Query gene ID	Contig1934_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	80.3	Contig1934_at	Contig1934	-	-	7e-13	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	S.X.	H.G.	Please select
0.40	53.1	Contig10389_at	Contig10389	-	-	2e+0	At5g67490	unknown protein	S.X.	H.G.	Please select
0.32	40.3	Contig14397_at	Contig14397	-	-	5e-1	At3g52105	unknown protein	S.X.	H.G.	Please select
0.30	37.0	Contig25477_at	Contig25477	-	-	6e+0	At5g33421	unknown protein	S.X.	H.G.	Please select
0.28	35.5	Contig5475_at	Contig5475	-	-	5e+0	At5g05960	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.24	27.2	Contig11867_s_at	Contig11867	-	-	4e-1	At1g03790	SOM (SOMNUS)	S.X.	H.G.	Please select
0.13	11.6	HA31E10r_s_at	HA31E10r	-	-	1e+0	At4g15620	integral membrane family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.8	98.9	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
7.7	98.6	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.8	97.8	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	1e-98	359	HW08F16V_x_at	HW08F16V	-	-	6e-7	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please select
0.34	1e-98	359	HW08F16V_at	HW08F16V	-	-	6e-7	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please select
0.10	2e-17	89	Contig7987_at	Contig7987	-	-	3e-15	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	C.G.	S.X.	Please select
0.22	1e-12	73	Contig4938_s_at	Contig4938	-	-	8e-47	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	C.G.	S.X.	Please select
0.02	3e-1	36	Contig13586_at	Contig13586	-	-	1e+0	At4g30660	hydrophobic protein, putative / low temperature and salt responsive protein, putative	C.G.	S.X.	Please select
0.01	3e-1	36	Contig2747_at	Contig2747	-	-	3e-19	At1g08450	CRT3 (CALRETICULIN 3)	C.G.	S.X.	Please select
0.02	3e-1	36	HVSMEc0009L17r2_at	HVSMEc0009L17r2	-	-	3e+0	At1g04778	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig21643_at	Contig21643	-	-	4e-4	At1g68570	proton-dependent oligopeptide transport (POT) family protein	C.G.	S.X.	Please select
0.01	3e-1	36	Contig13544_at	Contig13544	-	-	5e-2	At1g19300	PARVUS (PARVUS)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	7e-13	75	Arabidopsis thaliana	At1g11840	837731	ATGLX1 (GLYOXALASE I HOMOLOG)	Encodes a glyoxalase I homolog ATGLX1.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	5e-8	59	Glycine max	Gma.4424.1.S1_at	BG237912	-	-	2e-40	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please select
0.60	0	809	Oryza sativa	Os08g0191700	AK066092.1	-	Glyoxalase I family protein	2e-13	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.38	4e-24	113	Populus trichocarpa	Ptp.4360.1.S1_s_at	BU831376	hypothetical protein	-	4e-60	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.76	0	1522	Triticum aestivum	Ta.1842.2.S1_at	BJ321503	-	-	5e-14	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please select
0.34	1e-26	119	Vitis vinifera	1609781_s_at	CB341681	hypothetical protein LOC100257313	-	1e-66	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please select
0.53	1e-135	482	Zea mays	Zm.5962.1.S1_a_at	AY241545.1	glyoxalase I	-	1e-17	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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