Gene omics information

Query gene ID	Contig19290_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	61.0	Contig19290_at	Contig19290	-	-	7e+0	At5g65020	ANNAT2 (Annexin Arabidopsis 2)	S.X.	H.G.	Please select
0.67	84.7	Contig10796_at	Contig10796	-	-	1e-7	At5g19350	RNA-binding protein 45 (RBP45), putative	S.X.	H.G.	Please select
0.59	75.8	Contig22370_at	Contig22370	-	-	5e-3	At1g29160	Dof-type zinc finger domain-containing protein	S.X.	H.G.	Please select
0.56	74.3	Contig2124_at	Contig2124	-	-	2e-9	At4g09320	NDPK1	S.X.	H.G.	Please select
0.56	74.3	Contig6384_at	Contig6384	-	-	8e-20	At3g13460	ECT2	S.X.	H.G.	Please select
0.46	61.0	Contig8812_s_at	Contig8812	-	-	2e+0	At2g03710	SEP4 (SEPALLATA 4)	S.X.	H.G.	Please select
0.40	53.1	Contig3556_at	Contig3556	-	-	3e+0	At1g60640	unknown protein	S.X.	H.G.	Please select
0.39	50.5	Contig14226_at	Contig14226	-	-	2e-7	At3g12900	oxidoreductase, 2OG-Fe(II) oxygenase family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
61.3	100.0	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
43.2	99.9	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
38.9	99.9	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
32.8	99.9	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
28.2	99.8	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
27.5	99.8	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
25.5	99.8	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
24.1	99.8	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
18.7	99.7	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
16.4	99.6	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	3e-46	184	HM05N21r_at	HM05N21r	-	-	1e+0	At2g17120	LYM2 (LYSM DOMAIN GPI-ANCHORED PROTEIN 2 PRECURSOR)	C.G.	S.X.	Please select
0.07	1e-5	50	Contig10670_at	Contig10670	-	-	4e-4	At4g15550	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	C.G.	S.X.	Please select
0.04	5e-5	48	Contig11602_at	Contig11602	-	-	7e-2	At3g21800	UGT71B8 (UDP-GLUCOSYL TRANSFERASE 71B8)	C.G.	S.X.	Please select
0.05	2e-4	46	HVSMEm0012J18r2_at	HVSMEm0012J18r2	-	-	3e-1	At3g03000	calmodulin, putative	C.G.	S.X.	Please select
0.03	2e-4	46	Contig11522_at	Contig11522	-	-	9e-6	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	C.G.	S.X.	Please select
0.05	8e-4	44	Contig4750_at	Contig4750	-	-	4e+0	At5g15360	unknown protein	C.G.	S.X.	Please select
0.13	8e-4	44	Contig14077_at	Contig14077	-	-	2e+0	At5g17050	UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2)	C.G.	S.X.	Please select
0.04	8e-4	44	Contig11709_at	Contig11709	-	-	3e-3	At1g22360	AtUGT85A2 (UDP-glucosyl transferase 85A2)	C.G.	S.X.	Please select
0.03	1e-2	40	Contig18944_at	Contig18944	-	-	4e+0	At5g07571	-	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e+0	32	Arabidopsis thaliana	At5g65020	836626	ANNAT2 (Annexin Arabidopsis 2)	Annexins are calcium binding proteins that are localized in the cytoplasm. When cytosolic Ca2+ increases, they relocate to the plasma membrane. They may be involved in the Golgi-mediated secretion of polysaccharides.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e-6	54	Glycine max	GmaAffx.47330.1.S1_at	BU926438	-	-	2e-1	At4g09840	unknown protein	C.G.	S.X.	Please select
0.28	1e-52	208	Oryza sativa	Os04g0523600	AK070948.1	-	-	9e-4	At4g15550	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.205274.1.S1_at	pmrna10459	-	-	3e+0	At5g47455	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	3e-17	89	Triticum aestivum	TaAffx.93119.1.A1_at	BJ230352	-	-	2e-2	At1g50470	-	C.G.	S.X.	Please select
0.04	8e-3	40	Vitis vinifera	1611320_at	CF206248.1	hypothetical protein LOC100268157	-	2e-8	At3g16520	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please select
0.10	2e-7	56	Zea mays	Zm.1889.1.A1_at	CO520833	cytokinin-N-glucosyltransferase 1	-	1e-3	At3g55700	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage