Gene omics information

Query gene ID	Contig19275_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	80.3	Contig19275_at	Contig19275	-	-	9e-5	At3g13850	LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22)	S.X.	H.G.	Please select
0.60	77.3	Contig20987_at	Contig20987	-	-	1e-3	At4g02610	tryptophan synthase, alpha subunit, putative	S.X.	H.G.	Please select
0.43	56.4	EBem09_SQ004_B23_s_at	EBem09_SQ004_B23	-	-	2e+0	At4g15750	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.40	53.1	Contig568_s_at	Contig568	GRP94 homologue	-	4e-2	At1g06240	unknown protein	S.X.	H.G.	Please select
0.25	28.9	Contig10098_s_at	Contig10098	-	-	5e+0	At3g21352	unknown protein	S.X.	H.G.	Please select
0.13	11.6	Contig145_at	Contig145	-	-	4e-10	At1g08880	H2AXA	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.9	99.7	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
17.0	99.6	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
17.0	99.6	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.6	99.0	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
8.9	98.9	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.4	98.8	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.5	98.2	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.4	98.1	GSM363463	5 mM B(OH)3 treatment (5B) - rep1	GSE14521	Late response to boron toxicity in barley leaves
6.0	97.9	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.7	97.7	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	9e-19	93	Contig5336_s_at	Contig5336	-	-	7e-1	At3g26390	unknown protein	C.G.	S.X.	Please select
0.14	2e-16	85	Contig5335_at	Contig5335	-	-	1e-15	At3g56140	unknown protein	C.G.	S.X.	Please select
0.04	7e-7	54	Contig5333_s_at	Contig5333	-	-	4e-1	At5g62720	integral membrane HPP family protein	C.G.	S.X.	Please select
0.04	3e-6	52	Contig26118_s_at	Contig26118	-	-	1e+0	At5g36280	-	C.G.	S.X.	Please select
0.03	3e-6	52	Contig13671_at	Contig13671	-	-	1e-14	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	C.G.	S.X.	Please select
0.04	5e-5	48	Contig13781_at	Contig13781	-	-	6e-6	At1g22330	RNA binding / nucleic acid binding / nucleotide binding	C.G.	S.X.	Please select
0.03	5e-5	48	Contig12995_at	Contig12995	-	-	2e+0	At4g12230	esterase/lipase/thioesterase family protein	C.G.	S.X.	Please select
0.02	5e-5	48	Contig9666_at	Contig9666	-	-	3e-1	At1g44830	AP2 domain-containing transcription factor TINY, putative	C.G.	S.X.	Please select
0.03	7e-4	44	Contig13827_at	Contig13827	-	-	5e-7	At4g38900	bZIP protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	9e-5	48	Arabidopsis thaliana	At3g13850	820598	LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22)	F:unknown;P:biological_process unknown;C:chloroplast;PF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e-4	48	Glycine max	Gma.16660.1.S1_at	BE821812	-	-	7e-50	At2g40400	unknown protein	C.G.	S.X.	Please select
0.16	9e-96	351	Oryza sativa	Os05g0474600	AK059249.1	-	Aldose reductase (EC 1.1.1.21) (AR) (Aldehydereductase)	4e-17	At3g56140	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-6	54	Populus trichocarpa	PtpAffx.207790.1.S1_at	pmrna15484	hypothetical protein	-	2e-97	At3g56140	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.70	0	809	Triticum aestivum	Ta.4521.1.S1_at	BJ272530	-	-	1e-1	At2g25270	unknown protein	C.G.	S.X.	Please select
0.04	4e-7	54	Vitis vinifera	1614311_at	CF516097	hypothetical protein LOC100264243	-	2e-6	At1g15780	unknown protein	C.G.	S.X.	Please select
0.25	3e-21	101	Zea mays	Zm.18502.1.A1_at	CF623953	hypothetical protein LOC100278961	-	2e+0	At3g13920	EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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