Gene omics information

Query gene ID	Contig1924_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig1924_at	Contig1924	-	-	3e-1	At4g25020	KOW domain-containing protein / D111/G-patch domain-containing protein	S.X.	H.G.	Please select
0.83	94.0	Contig15086_at	Contig15086	-	-	6e-4	At5g40570	surfeit locus protein 2 family protein / SURF2 family protein	S.X.	H.G.	Please select
0.73	88.7	Contig15087_at	Contig15087	-	-	8e-3	At5g14390	-	S.X.	H.G.	Please select
0.73	88.7	Contig17040_at	Contig17040	-	-	2e-2	At3g60490	AP2 domain-containing transcription factor TINY, putative	S.X.	H.G.	Please select
0.50	66.9	Contig15990_at	Contig15990	-	-	7e+0	At2g14910	unknown protein	S.X.	H.G.	Please select
0.42	55.2	Contig8260_s_at	Contig8260	-	-	2e+0	At1g65230	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.1	99.5	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.0	99.1	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.9	99.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.7	98.3	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.9	97.9	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.6	97.7	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.8	97.0	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.3	96.4	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	3e-117	420	Contig1922_at	Contig1922	-	-	2e-62	At1g72370	P40	C.G.	S.X.	Please select
0.20	1e-63	242	Contig1923_s_at	Contig1923	-	-	1e+0	At1g58460	unknown protein	C.G.	S.X.	Please select
0.20	1e-63	242	Contig1923_at	Contig1923	-	-	1e+0	At1g58460	unknown protein	C.G.	S.X.	Please select
0.12	6e-41	167	Contig1919_at	Contig1919	-	-	2e-78	At1g72370	P40	C.G.	S.X.	Please select
0.02	2e-1	36	Contig11018_at	Contig11018	-	-	1e-48	At3g25140	QUA1 (QUASIMODO 1)	C.G.	S.X.	Please select
0.03	2e-1	36	Contig12802_at	Contig12802	-	-	2e+0	At2g34850	MEE25 (maternal effect embryo arrest 25)	C.G.	S.X.	Please select
0.03	2e-1	36	Contig19867_at	Contig19867	-	-	3e-1	At3g20750	zinc finger (GATA type) family protein	C.G.	S.X.	Please select
0.01	6e-1	34	Contig7098_at	Contig7098	-	-	1e-2	At1g56360	PAP6 (PURPLE ACID PHOSPHATASE 6)	C.G.	S.X.	Please select
0.05	6e-1	34	HB20B10r_at	HB20B10r	-	-	8e+0	At5g13410	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	36	Arabidopsis thaliana	At4g25020	828605	KOW domain-containing protein / D111/G-patch domain-containing protein	F:nucleic acid binding;P:biological_process unknown;C:intracellular;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	6e-25	115	Glycine max	GmaAffx.92132.1.S1_s_at	CF807857	-	-	6e-55	At3g04770	RPSAb (40S ribosomal protein SA B)	C.G.	S.X.	Please select
0.32	3e-24	113	Oryza sativa	Os.14549.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-6	54	Populus trichocarpa	PtpAffx.8891.4.A1_at	BU813820	-	-	2e-35	At3g04770	RPSAb (40S ribosomal protein SA B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.61	6e-163	573	Triticum aestivum	Ta.9625.1.S1_x_at	BJ236772	-	-	2e-2	At2g03110	RNA binding / nucleic acid binding	C.G.	S.X.	Please select
0.09	8e-24	109	Vitis vinifera	1621771_at	CB348522	40S ribosomal protein SA	-	1e-110	At1g72370	P40	C.G.	S.X.	Please select
0.12	2e-28	125	Zea mays	Zm.5139.1.S1_at	AI622756	40S ribosomal protein SA	-	8e-19	At3g04770	RPSAb (40S ribosomal protein SA B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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