Gene omics information

Query gene ID	Contig1922_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig1922_at	Contig1922	-	-	2e-62	At1g72370	P40	S.X.	H.G.	Please select
0.44	58.9	Contig9843_s_at	Contig9843	-	-	7e-2	At5g24860	FPF1 (FLOWERING PROMOTING FACTOR 1)	S.X.	H.G.	Please select
0.42	55.2	HV_CEb0015P21f_s_at	HV_CEb0015P21f	-	-	5e-2	At2g13560	malate oxidoreductase, putative	S.X.	H.G.	Please select
0.40	53.1	Contig5252_at	Contig5252	-	-	2e-1	At1g78710	unknown protein	S.X.	H.G.	Please select
0.31	38.6	Contig13923_at	Contig13923	-	-	1e+0	At3g61172	LCR8 (Low-molecular-weight cysteine-rich 8)	S.X.	H.G.	Please select
0.21	22.6	Contig9147_at	Contig9147	-	-	7e+0	At5g38630	ACYB-1	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.4	98.5	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
5.5	97.6	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.8	97.0	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.6	96.8	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	2e-125	448	Contig1919_at	Contig1919	-	-	2e-78	At1g72370	P40	C.G.	S.X.	Please select
0.30	3e-118	424	HY10F15u_s_at	HY10F15u	-	-	7e+0	At3g49550	unknown protein	C.G.	S.X.	Please select
0.20	2e-104	379	Contig1924_at	Contig1924	-	-	3e-1	At4g25020	KOW domain-containing protein / D111/G-patch domain-containing protein	C.G.	S.X.	Please select
0.11	9e-51	200	Contig1923_s_at	Contig1923	-	-	1e+0	At1g58460	unknown protein	C.G.	S.X.	Please select
0.11	9e-51	200	Contig1923_at	Contig1923	-	-	1e+0	At1g58460	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig15697_at	Contig15697	-	-	4e+0	At3g61870	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	36	rbags13g12_at	rbags13g12	-	-	4e+0	At5g16840	BPA1 (BINDINGPARTNEROFACD11 1)	C.G.	S.X.	Please select
0.02	3e-1	36	Contig12802_at	Contig12802	-	-	2e+0	At2g34850	MEE25 (maternal effect embryo arrest 25)	C.G.	S.X.	Please select
0.01	3e-1	36	Contig9549_at	Contig9549	-	-	1e-2	At3g50780	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	2e-62	240	Arabidopsis thaliana	At1g72370	843569	P40	acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.31	4e-40	167	Glycine max	Gma.3328.1.S1_at	AF020553.1	ribosome-associated protein p40	-	9e-68	At1g72370	P40	C.G.	S.X.	Please select
0.48	5e-105	383	Oryza sativa	Os03g0182600	AK061289.1	-	Ribosomal protein S2 family protein	5e-23	At1g72370	P40	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.26	3e-31	137	Populus trichocarpa	PtpAffx.17919.2.A1_at	CV275513	-	-	4e-26	At3g04770	RPSAb (40S ribosomal protein SA B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.79	0	1709	Triticum aestivum	Ta.28073.1.S1_at	CK213038	-	-	8e-35	At1g72370	P40	C.G.	S.X.	Please select
0.20	2e-47	188	Vitis vinifera	1621771_at	CB348522	40S ribosomal protein SA	-	1e-110	At1g72370	P40	C.G.	S.X.	Please select
0.47	0	874	Zea mays	Zm.16537.2.A1_at	CD437670	-	-	2e-35	At3g04770	RPSAb (40S ribosomal protein SA B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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