CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig19167_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 84.7 Contig19167_s_at Contig19167 - - 1e+1 At5g55550 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.33 42.6 Contig14345_at Contig14345 - - 2e-8 At2g20840 secretory carrier membrane protein (SCAMP) family protein S.X. H.G.
0.32 40.3 Contig10426_at Contig10426 - - 3e-9 At3g19630 radical SAM domain-containing protein S.X. H.G.
0.32 40.3 Contig10037_at Contig10037 - - 9e-1 At5g23760 heavy-metal-associated domain-containing protein S.X. H.G.
0.32 40.3 Contig20621_at Contig20621 - - 2e-3 At4g27320 universal stress protein (USP) family protein S.X. H.G.
0.32 40.3 HVSMEg0010H15r2_at HVSMEg0010H15r2 - - 3e+0 At4g25630 FIB2 (FIBRILLARIN 2) S.X. H.G.
0.31 38.6 Contig25611_at Contig25611 - - 2e-2 At1g68870 unknown protein S.X. H.G.
0.29 35.5 Contig15839_s_at Contig15839 - - 3e+0 At5g61650 CYCP4 S.X. H.G.
0.26 30.4 Contig12375_at Contig12375 - - 1e-4 At3g28940 avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative S.X. H.G.
0.26 30.4 Contig6814_at Contig6814 - - 7e-9 At5g59140 SKP1 family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.3 98.8 GSM238436 Embryo 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.4 98.5 GSM282029 Malting_day1_Merit_rep3 GSE11200 Expression data from malting barley seeds
7.0 98.4 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
6.5 98.2 GSM282028 Malting_day1_Merit_rep1 GSE11200 Expression data from malting barley seeds
6.4 98.1 GSM282026 Malting_day1_Legacy_rep4 GSE11200 Expression data from malting barley seeds
6.3 98.1 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.1 98.0 GSM238438 Embryo 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.9 97.9 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.7 97.7 GSM238437 Embryo 48 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.2 97.4 GSM146379 Maythorpe shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.96 0 848 Contig19167_at Contig19167 - - 1e+1 At5g55550 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.02 4e-1 34 Contig12417_at Contig12417 - - 2e+0 At2g03630 unknown protein C.G. S.X.
0.03 4e-1 34 Contig15137_at Contig15137 - - 4e-1 At3g27200 plastocyanin-like domain-containing protein C.G. S.X.
0.02 2e+0 32 Contig5538_at Contig5538 - - 1e-24 At1g30470 SIT4 phosphatase-associated family protein C.G. S.X.
0.01 2e+0 32 Contig2589_at Contig2589 - - 1e-3 At5g13500 unknown protein C.G. S.X.
0.03 2e+0 32 Contig36_s_at Contig36 - - 2e-17 At4g27090 60S ribosomal protein L14 (RPL14B) C.G. S.X.
0.04 2e+0 32 EBro08_SQ012_I19_at EBro08_SQ012_I19 - - 3e+0 At2g46280 TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) C.G. S.X.
0.03 2e+0 32 Contig7750_at Contig7750 - - 2e+0 At3g12510 unknown protein C.G. S.X.
0.02 2e+0 32 Contig7031_at Contig7031 - - 7e-1 At1g58100 TCP family transcription factor, putative C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+1 30 Arabidopsis thaliana At5g55550 835649 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MPOFBAV - - - C.G. S.X.
0.02 8e-2 38 Glycine max PsAffx.C14000066_at PsAffx.C14000066 - - 9e-1 At4g14410 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.14 4e-26 119 Oryza sativa Os01g0754000 AK063730.1 - Conserved hypothetical protein 5e-3 At2g20585 NFD6 (NUCLEAR FUSION DEFECTIVE 6) C.G. S.X.
0.05 5e+0 32 Populus trichocarpa Ptp.1910.1.A1_at CK092152 - - 2e+0 At5g44430 PDF1.2c (plant defensin 1.2c) C.G. S.X.
0.67 0 654 Triticum aestivum Ta.12837.1.A1_at CK169294 - - 5e+0 At5g11920 AtcwINV6 (6-&1-fructan exohydrolase) C.G. S.X.
0.04 4e+0 30 Vitis vinifera 1617160_at CB972995 - - 9e-1 At1g25240 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related C.G. S.X.
0.12 5e-19 93 Zea mays Zm.12667.1.S1_at CA831456 hypothetical protein LOC100276149 /// hypothetical protein LOC100278740 - 1e+0 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage