Gene omics information

Query gene ID	Contig19041_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	88.7	Contig19041_at	Contig19041	-	-	5e+0	At4g22850	-	S.X.	H.G.	Please select
0.60	77.3	Contig12262_at	Contig12262	-	-	2e-1	At5g23405	high mobility group (HMG1/2) family protein	S.X.	H.G.	Please select
0.50	66.9	Contig7725_at	Contig7725	-	-	8e-1	At1g22180	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	S.X.	H.G.	Please select
0.50	66.9	Contig5409_at	Contig5409	-	-	3e-18	At3g02580	STE1 (STEROL 1)	S.X.	H.G.	Please select
0.50	66.9	Contig2046_at	Contig2046	-	-	5e+0	At1g60815	RALFL7 (RALF-LIKE 7)	S.X.	H.G.	Please select
0.31	38.6	Contig22918_at	Contig22918	-	-	3e-1	At2g21140	ATPRP2 (PROLINE-RICH PROTEIN 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.6	99.5	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
10.2	99.1	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
7.2	98.5	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
7.0	98.4	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
6.7	98.3	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.9	97.9	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.9	97.9	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
5.9	97.9	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.3	97.4	GSM68890	3 h control replicate 2	GSE3097	Barley1 salinity stress study
4.3	96.4	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	Contig7175_at	Contig7175	-	-	7e+0	At5g60630	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig13824_at	Contig13824	-	-	4e-1	At5g46770	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig12845_at	Contig12845	-	-	9e-34	At5g37020	ARF8 (AUXIN RESPONSE FACTOR 8)	C.G.	S.X.	Please select
0.02	6e-1	34	Contig17515_at	Contig17515	-	-	2e+0	At2g20120	COV1 (CONTINUOUS VASCULAR RING)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig15230_at	Contig15230	-	-	2e-11	At5g59430	TRP1 (TELOMERIC REPEAT BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig14482_at	Contig14482	-	-	1e-4	At3g48940	remorin family protein	C.G.	S.X.	Please select
0.03	3e+0	32	EBem05_SQ003_L06_at	EBem05_SQ003_L06	-	-	3e+0	At3g21371	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig17566_at	Contig17566	-	-	4e-2	At4g11060	MTSSB (mitochondrially targeted single-stranded DNA binding protein)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig8134_at	Contig8134	-	-	2e-17	At1g54220	dihydrolipoamide S-acetyltransferase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e+0	32	Arabidopsis thaliana	At4g22850	828384	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPMFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e-1	36	Glycine max	GmaAffx.56393.1.S1_at	BU964448	-	-	3e+0	At5g22050	protein kinase family protein	C.G.	S.X.	Please select
0.10	5e-17	89	Oryza sativa	Os01g0916200	AK073904.1	-	Adaptin, N-terminal domain containing protein	4e-35	At1g31730	epsilon-adaptin, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.215543.1.S1_at	pmrna29802	hypothetical protein	-	7e+0	At2g11626	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.61	7e-132	470	Triticum aestivum	Ta.7048.2.A1_s_at	BE430366	-	-	2e+0	At1g68630	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1607281_at	CB976932	hypothetical protein LOC100247365	-	5e-115	At5g55190	RAN3 (RAN GTPASE 3)	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	ZmAffx.448.1.A1_at	AI677105	Hexokinase	-	3e+0	At4g29130	HXK1 (HEXOKINASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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